Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1155 ATGGCAGGGAAAAGTATGTTTCGCTATGCCGATGGCATCGACAAGTTTCTCATGTTTTTCGGGACTCTGGGCAGCATAGGAGATGGAGTGCAGATACCTCTCACGATGTTCATTCTCAAGGACGTGATCAATGCTTATGGAGACAAAAACAGTGGCTTGACAAATGATATGGTTGACAAGTTTGCACTGCGTCTACTTTACACAGCAGTTGGAGTTGGACTTTCAGCCTTTGTGGAAGGATTATGTTGGGCAAGAACAGCAGAGAGACAGACATCTCGGATGAGAATGGAATATTTGAAATCTGTGCTTAGACAAGAAGTTGGCTTCTTTGATACCCAAGCTGCAGGCTCTTCAACAACTCATGAGGTCGTCTCCCTCATTTCCTCTGATGCCAGTTCAATCCAAGTTGCTTTGTGTGAAAAGATACCTGATTGTCTTGCTTACATGTCAACATTCGTTTTCTGCCACATATTTGCCTTCTTATCATCATGGAGGTTGACATTTGCAGTCATCCCGCTCTCAGTCATGTTCATTGGTCCAGGGCTCGTGTTTGGAAAGATCATGGTGGACTTGATAATGAAGATGATTGAATCTTATGGTGTTGCTGGTGGGATTGCAGAGCAAGCAGTATCTTCAATAAGAACTGTATATTCATATGTAGGAGAAAGTCAAACACTGGAAAATTTCAGCCAAGCACTCCAAAAAAGTATGGAATTTGGGATTAAGTCGGGTTTTGTGAAGGGATTGATGCTTGGAAGTATGGGAATCATTTATGTTGGTTGGGGCTTTCAAGCTTGGATTGGCACTTACTTGATTACTGAGAAAGGAGAAAAAGGAGGCGATGTTTTTATAGCTGGTTTCAATGTTCTAATGGGAGGACTGAGTATATTGAGTGCACTTCCTCATCTAACCTCCATCACAGAGGCAAAATCTGCAACTACTCGTATCCTTGAAATGATCGACCGTGTTTCTGAGACAGACAGAGAAGACAAAAAGGAGAAAGCTCTATCACACGTGAAAGGGGAAATTGAATTTCAAAACGTATATTTTAGTTATCCATCAAGACCAGATACTCCTGTATTACAAGGATTCAATCTGAAGGTTCCAGCAGGGAAGAGAGTAGGACTTGTAGGAGGAAGTGGGTCTGGCAAGTCCACTGTTATATCACTGCTTGAAAGGTTTTATGATCCCACTGATGGAGAGATACTCTTGGATGGACATAGAATAAAAAGATTTCAGCTAAAATGGCTGAGATCTCAAATGGGTCTGGTGAATCAGGAACCTGTTCTGTTTGCAACTTCAATAAGAGAGAACATAATGTTTGGAAAAGATGGAGCTTCAATGGAAGAAGTGATGAATGCAGCTAAAGCTGCAAACGCACATGACTTCATCGTTAGGCTATCAGAAGGTTATGATACTCAAGTTGGTCAGTTTGGTTTCCAGATGTCTGGAGGTCAAAAGCAACGGATTGCCATAGCAAGAGCTCTTCTAAGGGACCCAAGAATGCTGCTACTTGATGAAGCAACAAGTGCACTAGATGCACAATCTGAACAAATGGTACAGGAAGCAATAGATAAGGCATCAAAAGGAAGGACGACAATCACCATCGCACATCGCCTTTCAACGATACAAACAGCACACCAGATTGTGGTTCTTAAAGCTGGAAGAGTAATTGAATCAGGTTCACATGATGAGCTGATACTGTTGAACAATGGACAGGGTGGAGAGTATCTAAGAATGGTGCAGTTGCAGCAGATGGCTGTGCAAAATGAAACTTTCAATGATTCCAACATTGAAATGGATAAAAGATATCGCCATAGGATGAGTACTCCCACAAGCCCAATGAGTGTGAGATCCAGTGGACCTAGTACTCCAGTTTTATATCCCTTCAGCACAGCGATGTCTGTTTCCATGGGAACACCCTACTCTTACTCTGTCCAATTTGATCCTGATGATGAAAGCTTTGAAGAAGATAGAAAGCAAACTTATCCTTCTCCTTCCCAATGGCGTTTGCTGAAAATGAATGCACCTGAATGGGGACGAGCCTTCCTTGGATGTGTAGGTGCTCTGGGCTCAGGAGCAGTGCAGCCCATTAATGCTTATTGCGTCGGAGCACTCATATCAGTTTATTTTCGTGCTAATGAGCCCAAAATTAAGTCTAAATCTAGAACCTTGTCACTTGTCTTTTTAGGAATTGGCATTTTCAACTTCTTAACAAATATCCTGCAGCATCACAATTTTTCTATCATGGGAGAAAGATTAACCAAAAGGGTGCGTGAGAAAATACTTGAAAAGCTTATGACATTCGAAATTGGATGGTTCGATCAAGATGAGAACACAAGTGCAGCCATTTGTGCAAGGCTATCGACTGAAGCCAACATGGTCCGTTCTCTTGTTGGAGACAGAATGTCATTACTGGTCCAAGCAATTTTTAGTGCAGTCCTTGCTTACAGTGTGGGACTTGTGCTCTCGTGGAGGTTAACTCTGGTGATGATTGCAGTGCAGCCACTAGTCATCGGTAGCTTCTATGCAAGGAGTGTGTTGATGAAGAGCATGGCTGAAAAAGCCCGTAAAGCACAAAGAGAAGGCAGCCAACTTGCAAGTGAAGCCGTTATAAACCATAAAACTATCACTGCATTCTCTTCTCAGAAAAAGATGCTCGGGCTCTTTGCTGCCACGCAAAAAGGTCCTAAGAAGGAGAGTGCTAGGCAGTCTTGGATATCTGGCCTTGGCCTATTCAGTTCCCAGTTCTTTAACACTGCTGCTACAGCTTTGGCCTACTGGTATGGTGGGAGACTATTGACACAAAATTTAATATCCTCAGAGCATATCTTCCAAGCATTCTTGATATTGCTATTCACCGCATATATCATAGCGGATGCTGGAAGTATGACTTCTGATATATCTAAAGGAAGCAATGCTGTTGGATCAGTTTTTGCAATCCTAGACAGGAAGACTGAAATTGATCCAGATAGCAAATCAGGACGAGATCTCAAAAGACGGATAAAGGGAAAGGTAGAGCTCAGGAGTGTTTGCTTCTCATATCCAACAAGACCTGACCAGATGGTTTTAAGGAGTCTGAGCCTTAAAATTGATGCAGGAAGAACAGTTGCACTAGTGGGGCAAAGTGGTTCTGGAAAATCTACCATTATTGGACTCATTGAGAGGTTTTATGATCCCTCAAGTGGATCCGTATACATTGATGAGCAAGACATTAAGCACTACAATTTGAGATGGTTAAGGTCACAGATTGCATTAGTCAGCCAAGAGCCAACTATTTTTGCCGGAACTATCAGAGAAAACATAGCCTATGGAAAGGGGGATGCAGGGGAATCAGAGATTATAGAAGCAGCTGTTCTAGCCAATGCTCACGAATTTATAAGTGGAATGGAAGATGGGTACAATACATACTGCGGAGAGAGAGGAGCTCAGCTATCAGGAGGCCAAAAACAGAGGATCGCACTCGCTCGAGCAATCCTGAAGAATCCCTCAATCCTTCTGCTAGATGAGGCAACGAGCGCACTCGACAGTGTATCAGAGAACTTGGTGCAGGAAGCGCTGGAGAAGATGATGGTGGGCAGAACTTGCATAATCGTGGCTCACCGATTATCAACGATTCAGAAGGCGAACTCCATCGCCGTGATCAAGAACGGAAAAGTTGTGGAACAAGGATCGCACAGTGAGCTGATTTCATTGGGGCGCCGTGGAGAGTACTATTCTCTGAGAAATTTGCAG 3735 43.13 MAGKSMFRYADGIDKFLMFFGTLGSIGDGVQIPLTMFILKDVINAYGDKNSGLTNDMVDKFALRLLYTAVGVGLSAFVEGLCWARTAERQTSRMRMEYLKSVLRQEVGFFDTQAAGSSTTHEVVSLISSDASSIQVALCEKIPDCLAYMSTFVFCHIFAFLSSWRLTFAVIPLSVMFIGPGLVFGKIMVDLIMKMIESYGVAGGIAEQAVSSIRTVYSYVGESQTLENFSQALQKSMEFGIKSGFVKGLMLGSMGIIYVGWGFQAWIGTYLITEKGEKGGDVFIAGFNVLMGGLSILSALPHLTSITEAKSATTRILEMIDRVSETDREDKKEKALSHVKGEIEFQNVYFSYPSRPDTPVLQGFNLKVPAGKRVGLVGGSGSGKSTVISLLERFYDPTDGEILLDGHRIKRFQLKWLRSQMGLVNQEPVLFATSIRENIMFGKDGASMEEVMNAAKAANAHDFIVRLSEGYDTQVGQFGFQMSGGQKQRIAIARALLRDPRMLLLDEATSALDAQSEQMVQEAIDKASKGRTTITIAHRLSTIQTAHQIVVLKAGRVIESGSHDELILLNNGQGGEYLRMVQLQQMAVQNETFNDSNIEMDKRYRHRMSTPTSPMSVRSSGPSTPVLYPFSTAMSVSMGTPYSYSVQFDPDDESFEEDRKQTYPSPSQWRLLKMNAPEWGRAFLGCVGALGSGAVQPINAYCVGALISVYFRANEPKIKSKSRTLSLVFLGIGIFNFLTNILQHHNFSIMGERLTKRVREKILEKLMTFEIGWFDQDENTSAAICARLSTEANMVRSLVGDRMSLLVQAIFSAVLAYSVGLVLSWRLTLVMIAVQPLVIGSFYARSVLMKSMAEKARKAQREGSQLASEAVINHKTITAFSSQKKMLGLFAATQKGPKKESARQSWISGLGLFSSQFFNTAATALAYWYGGRLLTQNLISSEHIFQAFLILLFTAYIIADAGSMTSDISKGSNAVGSVFAILDRKTEIDPDSKSGRDLKRRIKGKVELRSVCFSYPTRPDQMVLRSLSLKIDAGRTVALVGQSGSGKSTIIGLIERFYDPSSGSVYIDEQDIKHYNLRWLRSQIALVSQEPTIFAGTIRENIAYGKGDAGESEIIEAAVLANAHEFISGMEDGYNTYCGERGAQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTCIIVAHRLSTIQKANSIAVIKNGKVVEQGSHSELISLGRRGEYYSLRNLQ 1245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8120430 8125628 + MC11g0954 Mch11g1155 680089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1155 1245 FunFam Putative ABC transporter B family member 8 648 993 - -
Mch11g1155 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1245 IPR027417 -
Mch11g1155 1245 FunFam ABC transporter B family member 4 333 592 - -
Mch11g1155 1245 FunFam ABC transporter B family member 4 996 1245 - -
Mch11g1155 1245 CDD ABC_6TM_Pgp_ABCB1_D1_like 18 316 - -
Mch11g1155 1245 CDD ABC_MTABC3_MDL1_MDL2 1006 1245 - -
Mch11g1155 1245 Gene3D - 997 1245 IPR027417 -
Mch11g1155 1245 SMART AAA_5 370 555 IPR003593 GO:0016887(InterPro)
Mch11g1155 1245 SMART AAA_5 1033 1225 IPR003593 GO:0016887(InterPro)
Mch11g1155 1245 SUPERFAMILY ABC transporter transmembrane region 4 322 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch11g1155 1245 SUPERFAMILY ABC transporter transmembrane region 669 989 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch11g1155 1245 ProSitePatterns ABC transporters family signature. 482 496 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch11g1155 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 683 970 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Mch11g1155 1245 Gene3D ABC transporter type 1, transmembrane domain 5 595 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch11g1155 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 343 579 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch11g1155 1245 ProSitePatterns ABC transporters family signature. 1145 1159 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch11g1155 1245 Gene3D ABC transporter type 1, transmembrane domain 651 993 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Mch11g1155 1245 Gene3D - 333 585 IPR027417 -
Mch11g1155 1245 Pfam ABC transporter transmembrane region 683 955 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Mch11g1155 1245 Pfam ABC transporter transmembrane region 18 292 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Mch11g1155 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 19 308 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Mch11g1155 1245 FunFam ABC transporter B family member 15-like 6 346 - -
Mch11g1155 1245 PANTHER ABC TRANSPORTER B FAMILY 4 613 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Mch11g1155 1245 CDD ABC_6TM_Pgp_ABCB1_D2_like 672 988 - -
Mch11g1155 1245 Pfam ABC transporter 361 510 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch11g1155 1245 CDD ABC_MTABC3_MDL1_MDL2 343 584 - -
Mch11g1155 1245 Pfam ABC transporter 1024 1173 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch11g1155 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1006 1242 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch11g1155 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 584 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1155 K05658 - - csv:101213474 2216.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1155 Mch-Chr11:8120430 Mch9g2316 Mch-Chr9:23290655 0 dispersed
Mch11g1155 Mch-Chr11:8120430 Mch8g2193 Mch-Chr8:24977204 8.91E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g448 . Blo03g01437 . . . . . . . . . Cma09g00928 . . . . . Bhi09g01941 . . . Hepe01g1307 Mch11g1155 . . . . . . . . . Cone9ag0100 . . . . Chy04g00994 . . . . . . . . . . . Cmo09g00924 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136