Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1162 ATGGCAAAATTAGGGTTTGCATTTGGGGTTTTGATGTGTTTGATGGTGTTGGTAAAGGAAGGTGATGGCACTGAGTTCACTGTGGGAGGAGCCAAGGGGTGGTCTCTTCCAATGGCTCAAACCTATAATCAATGGGCAGAAGCAAACAGGTTCCAAATCGGAGACTCTTTAGTCTTCAACTATGCTGCTGATGAAGACTCAGTGCTTCAAGTAACCCAAGATGAGTACAACAGTTGCAGCATCCAATCACCAATCAAACAGTTCTCTGATGGCCACACTGTTTTCCAGTTTGACAAATCTGGGCCTTACTATTTCATCAGTGGAAACAAAGACAATTGCCTCAAAAATGAGAAGCTGGCGGTGGTTGTTTTGGCTGATAGAAGCAATTCAACTTCTAATCAGACCATCACTCTGCCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTGCACCAGCAAATGATCAAACTGGCACAGCTTCTCCCCCACCGTCCGGGTCGGGATCGACTGAAATCATCCCTTCTCCCCCACCTGCTGAGGAAGTCAGTCCATCTCCAGCGCCTACTGGGGAAGAGTCTCCGCCTGCAGGGATGTCTGCGATTAACCCTACGCCACCTCCTCTCTTGGTACAACCACCTCCGAGTGTCGGATTTTCGATCATCCCCAGCAGCATTGGCTCCATTGGAGCCTTTGTTGCTGTTGCTATATTAGCTTTC 723 48.55 MAKLGFAFGVLMCLMVLVKEGDGTEFTVGGAKGWSLPMAQTYNQWAEANRFQIGDSLVFNYAADEDSVLQVTQDEYNSCSIQSPIKQFSDGHTVFQFDKSGPYYFISGNKDNCLKNEKLAVVVLADRSNSTSNQTITLPPSPSPSPSPSPSPAPANDQTGTASPPPSGSGSTEIIPSPPPAEEVSPSPAPTGEESPPAGMSAINPTPPPLLVQPPPSVGFSIIPSSIGSIGAFVAVAILAF 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8155706 8157160 + MC11g0958 Mch11g1162 680096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1162 241 Gene3D - 24 136 IPR008972 -
Mch11g1162 241 FunFam Early nodulin-like protein 1 23 128 - -
Mch11g1162 241 PANTHER BLUE COPPER PROTEIN 13 152 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Mch11g1162 241 MobiDBLite consensus disorder prediction 154 170 - -
Mch11g1162 241 MobiDBLite consensus disorder prediction 129 216 - -
Mch11g1162 241 SUPERFAMILY Cupredoxins 23 124 IPR008972 -
Mch11g1162 241 MobiDBLite consensus disorder prediction 139 153 - -
Mch11g1162 241 ProSiteProfiles Phytocyanin domain profile. 24 125 IPR003245 GO:0009055(InterPro)
Mch11g1162 241 MobiDBLite consensus disorder prediction 179 193 - -
Mch11g1162 241 MobiDBLite consensus disorder prediction 201 215 - -
Mch11g1162 241 Pfam Plastocyanin-like domain 34 115 IPR003245 GO:0009055(InterPro)
Mch11g1162 241 CDD OsENODL1_like 24 124 IPR041846 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1162 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1234 Mch-Chr10:9925258 Mch11g1162 Mch-Chr11:8155706 1.50E-51 dispersed
Mch11g1162 Mch-Chr11:8155706 Mch2g0644 Mch-Chr2:4414939 1.82E-35 dispersed
Mch11g1162 Mch-Chr11:8155706 Mch8g3069 Mch-Chr8:33175679 2.03E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g460 . . Bda07g00343 . . . . . Cmo16g00907 Cmo04g01014 Cma01g01146 . . . Sed04g3189 . . Bhi09g01933 Tan01g4518 Cmetu04g2832 . Hepe01g1302 Mch11g1162 . Cla10g00524 Cam10g0519 Cec10g0536 Cco10g0526 Clacu10g0541 Cmu10g1367 Cre10g0769 . . . . Lsi04g01232 Csa03g00531 Chy04g00987 Cme06g02276 . . . . . . . . Sed07g1925 Cmo01g01199 . Cma04g00944 Cma16g00852 Car04g00882 Car16g00852 . . Bhi11g00646 Tan01g1683 Cmetu06g0869 . . Mch10g1234 . Cla05g01522 Cam05g1635 Cec05g1638 Cco05g1671 Clacu05g1624 Cmu05g1522 . Lsi05g00619 . Chy06g01800 Cme04g00836
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch11g1162 . 11 128 Phytocyanin Superfamily AT3G20570 59.7 3.8e-37 151.8
Mch4g2169 . 19 140 Phytocyanin Superfamily AT1G48940 53.7 7.3e-37 150.6
Mch8g2439 . 31 140 Phytocyanin Superfamily AT3G01070 66.7 8.1e-38 153.7
Mch8g0503 . 8 172 Phytocyanin Superfamily AT2G25060 54.5 1.4e-43 172.9
Mch8g2439 . 28 159 Phytocyanin Superfamily AT5G15350 61.7 2.1e-44 175.6
Mch8g0503 . 6 172 Phytocyanin Superfamily AT4G31840 52.9 2.5e-45 178.7
Mch4g2169 . 19 140 Phytocyanin Superfamily AT1G48940 53.7 7.3e-37 150.6
Mch11g1162 . 11 128 Phytocyanin Superfamily AT3G20570 59.7 3.8e-37 151.8
Mch8g0503 . 11 171 Phytocyanin Superfamily AT5G25090 51.2 1.4e-38 156.4
Mch8g0503 . 8 172 Phytocyanin Superfamily AT2G25060 54.5 1.4e-43 172.9
Mch8g0503 . 6 172 Phytocyanin Superfamily AT4G31840 52.9 2.5e-45 178.7
Mch8g2439 . 31 140 Phytocyanin Superfamily AT3G01070 66.7 8.1e-38 153.7
Mch8g2439 . 28 159 Phytocyanin Superfamily AT5G15350 61.7 2.1e-44 175.6
Mch6g1074 . 26 131 Phytocyanin Superfamily AT2G27035 61.3 2.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003173 1 2 0 0 0 2 3 2 2 2 2 2 3 2 2 2 2 0 0 2 2 2 2 2 2 3 2 2 2 1 51