Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch11g1194 | ATGCCATCGGCTCAAGATCCCTTCTATGTTGTAAAGGACGAGATTCAAGAATCTATTGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATTTCTTCCGATCCAGGAGAGAGAGTACAACTCACTAAAGAGTTGCTCGCTGCCTGTGAGAGCATTGAATGGCAGGTGGACGAATTAGACAAAGCTATTGCTGTGGCAGCTAGAGACCCTTCTTGGTATGGCATTGATGATTTAGAACTTGAAAAACGAAGGAGATGGACGAGTACAGCTAGGACACAGGTTGGAAATGTCAAGAAAGTAGTGGGAGCTGGAAAGGAGCAAACCGGACCCGCTAGTGCAAATGGGATGCGTCGGGAATTGATGAGACTACCTAACCCACACGATACAGACAGATCAAACTTATATACACCCCACCAAGCTAACGACGACTTCATCACATCCGAATCAGATAGACAACTGCTTCTCATAAAGCAGCAGGACGAGGAGTTGGATGAGCTGAGTGCAAGCGTGGAGAGAATTGGAGGCGTTGGGCTTACCATACATGAAGAGCTGCTTGCACAGGATAAAATTATTGACGAGCTAGGAATGGAAATGGACAGTACATCAAATCGTCTTGATTTTGTTCAGAAAAAAGTGGCTGTGGTCATGAAGAAGGCTAGCGCCAAGGGCCAGATAATGATGATATTGTTCTTGTTGGCTTTGTTCATCATTCTTTTTGTGTTGGTATTCCTCACATAA | 741 | 44.67 | MPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDPGERVQLTKELLAACESIEWQVDELDKAIAVAARDPSWYGIDDLELEKRRRWTSTARTQVGNVKKVVGAGKEQTGPASANGMRRELMRLPNPHDTDRSNLYTPHQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDELGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLLALFIILFVLVFLT | 246 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 8383989 | 8387804 | - | MC11g0985 | Mch11g1194 | 680128 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch11g1194 | 246 | SMART | tSNARE_6 | 149 | 216 | IPR000727 | - | |
| Mch11g1194 | 246 | ProSitePatterns | Syntaxin / epimorphin family signature. | 160 | 199 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
| Mch11g1194 | 246 | CDD | SNARE_NTD_AtSYP61-like | 5 | 102 | - | - | |
| Mch11g1194 | 246 | CDD | SNARE_Qc | 157 | 214 | - | - | |
| Mch11g1194 | 246 | Gene3D | - | 161 | 225 | - | - | |
| Mch11g1194 | 246 | SUPERFAMILY | SNARE fusion complex | 153 | 216 | - | - | |
| Mch11g1194 | 246 | Gene3D | - | 2 | 104 | - | - | |
| Mch11g1194 | 246 | FunFam | Syntaxin 10 | 3 | 105 | - | - | |
| Mch11g1194 | 246 | Pfam | Syntaxin 6, N-terminal | 6 | 99 | IPR015260 | GO:0016020(InterPro)|GO:0048193(InterPro) | |
| Mch11g1194 | 246 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 154 | 216 | IPR000727 | - | |
| Mch11g1194 | 246 | PANTHER | SYNTAXIN | 11 | 235 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
| Mch11g1194 | 246 | SUPERFAMILY | t-snare proteins | 5 | 100 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
| Mch11g1194 | 246 | Coils | Coil | 192 | 212 | - | - | |
| Mch11g1194 | 246 | Pfam | SNARE domain | 191 | 242 | IPR000727 | - | |
| Mch11g1194 | 246 | FunFam | syntaxin-61 isoform X1 | 157 | 218 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch11g1194 | K08500 | - | csv:101212527 | 400.593 |