Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1200 ATGATTTTTGGGGTCGTGAGGCGACGAGTTGCGTCTGGAGGCTCTAATCTTTTTTCTGCGCATTTGCGGGATGTCAGACCTTCCGTTTCTGCAGGAAGAGTTCGTTCCATTGCTGTGAAAGAGATTTTGCACCAGTGTAGAAGCTTTGGGCATGTAAGAAATTTCTCTCACCTACTTTCACCTGGTGGCTTTGCTAGTCCGCAATCTCTAAGGCTAGCTTTTGCAAGTATGCAGCAAAGACCTATGATGGAAATGAATGGCCGGAACTTCTCTTCAGATAATGGGGATCTGCTTGATGTTGTCGTACCTCCATTGGCTGAATCTATCACTGATGGAACTCTGGCAAAATTCCTGAAGAATCCCGGTGATAGAGTAGAACTGGATGAAGCAATTGCTCAGATTGAAACAGATAAGGTTACAATTGATGTCACTAGTCCTGGAGCTGGTGTCATCCAGAAGTTTGTTGCCAAGGAAGGAGATACAGTTGAACCAGGTACCAAGGTTGCTGTTATTTCAAAATCTGCTGAAGGTGTAACTCATGTTGCTCCTTCTGAGAAGACATCAGAGCAAGCTGCTTCTCAGACAGCTCCAGCTGAAAAAATAGAAAAGGAGAAAGAAAAGCCTAAAGTTGAAACTCCTGTTAGTGAGAAGCCTAAAGCACCATCTCCACCACCTCCTAAACGCTCAGCTACAGAACCCCAACTTCCTCCCAAGGATAGGGAAAGACGAGTTCCAATGACAAGGCTTCGGAAGCGAGTTGCTACACGTTTGAAAGATTCTCAGAACACATTTGCCATGTTGACGACCTTCAATGAAGTTGACATGACAAATTTGATGAAGCTTCGTTCTGAATACAAGGATGCTTTTGTGGAAAAGCATGGAGTCAAGTTGGGTCTTATGTCTGGATTTATTAAAGCTGCTGTCAGTGGGCTTCAGAATCAACCTATTATTAATGCTGTGATTGATGGGGATGATATCATCTACCGAGATTATATAGACATCAGTATAGCTGTCGGCACTCCTAAGGGTCTTGTTGTGCCAGTTATTAGAAATGCCGATAAGATGAATTTTGCTGAGATAGAGAAGGAGATTAACACCCTTGCAAAGAAGGCAAATGATGGCACTATATCAATTGACGAGATGGCTGGAGGTTCATTTACAGTATCCAACGGTGGTGTTTATGGAAGCCTTTTGAGTACCCCCATTATTAATCCCCCACAGTCGGCAATCTTGGGAATGCATTCTATAGTCTCCCGTCCCATGGTGGTTGGAGGCAATGTCGTCCCAAGGCCAATGATGTACATCGCTTTAACGTACGACCACAGACTCATTGATGGGAGAGAGGCAGTCTTCTTTTTGCGCCGCATCAAGGACATTGTCGAAGACCCACGGAGACTTCTCCTTGACATATAA 1413 44.37 MIFGVVRRRVASGGSNLFSAHLRDVRPSVSAGRVRSIAVKEILHQCRSFGHVRNFSHLLSPGGFASPQSLRLAFASMQQRPMMEMNGRNFSSDNGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTIDVTSPGAGVIQKFVAKEGDTVEPGTKVAVISKSAEGVTHVAPSEKTSEQAASQTAPAEKIEKEKEKPKVETPVSEKPKAPSPPPPKRSATEPQLPPKDRERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFVEKHGVKLGLMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADKMNFAEIEKEINTLAKKANDGTISIDEMAGGSFTVSNGGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8440273 8449900 + MC11g0991 Mch11g1200 680134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1200 470 CDD lipoyl_domain 99 171 - -
Mch11g1200 470 MobiDBLite consensus disorder prediction 233 249 - -
Mch11g1200 470 MobiDBLite consensus disorder prediction 181 195 - -
Mch11g1200 470 FunFam Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial 233 468 - -
Mch11g1200 470 SUPERFAMILY CoA-dependent acyltransferases 240 469 - -
Mch11g1200 470 MobiDBLite consensus disorder prediction 175 249 - -
Mch11g1200 470 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 240 468 IPR001078 GO:0016746(InterPro)
Mch11g1200 470 NCBIfam dihydrolipoyllysine-residue succinyltransferase 219 469 IPR006255 GO:0004149(InterPro)|GO:0006099(InterPro)|GO:0045252(InterPro)
Mch11g1200 470 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED 61 469 IPR050537 GO:0004149(PANTHER)|GO:0005739(PANTHER)|GO:0006099(PANTHER)
Mch11g1200 470 MobiDBLite consensus disorder prediction 198 214 - -
Mch11g1200 470 Gene3D - 226 466 IPR023213 -
Mch11g1200 470 Gene3D - 98 174 - -
Mch11g1200 470 SUPERFAMILY Single hybrid motif 98 189 IPR011053 -
Mch11g1200 470 ProSiteProfiles Biotinyl/lipoyl domain profile. 97 172 IPR000089 -
Mch11g1200 470 MobiDBLite consensus disorder prediction 217 232 - -
Mch11g1200 470 Pfam Biotin-requiring enzyme 100 171 IPR000089 -
Mch11g1200 470 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 122 151 IPR003016 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1200 K00658 - - csv:101204042 805.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1200 Mch-Chr11:8440273 Mch4g2003 Mch-Chr4:22382147 2.26E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g536 . . . . Bpe09g00166 . Bma10g00562 Bma13g01068 . . Cma01g01120 Cma09g00960 Car01g00994 Car09g00875 Sed07g2678 Cpe06g00776 Cpe02g00780 Bhi09g01660 Tan01g4573 Cmetu01g1279 . . Mch11g1200 . . . . . . . . . . Cone14ag1156 . Lsi02g01894 Csa07g01104 . . Blo07g00897 Blo10g00841 . Bda12g00921 . Bpe03g00785 . . . Cmo01g01170 Cmo09g00960 . . . . . . . . . . . . . Cla09g01019 Cam09g1075 Cec09g1075 Cco09g1094 . . Cre09g1040 . . . Cme01g01018
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003198 2 2 3 4 3 1 2 1 1 0 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 3 2 49