Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1201 ATGGAAGCGCCGCCGTTCGCCGTCGCTGGTTCTTCTTCCTCTTCTTCTTCTCAGATTGTATTTCGATCACTTTCCTCATCGCCTCGTACGAGCTCTCTCTTTTTTCTTCCCAATAGTTGTTATAAAACTCGTCATCTCAAAGTCAAGTCCTCTGGCAAGTTTGCTGTTCGCGCCTCATTTGCTGGTGACTCAGTCGTGACTTTGCTGGATTACGGTGCTGGTAATGTTCGTAGTGTGAGGAATGCAATTCGTTACCTTGGCTTTGATATCAAAGATGTGCAAACACCAGAAGACATTCTAAATGCAAACCGCCTAATATTTCCTGGAGTTGGGGCATTTGCTCCGGCCATGGACGTGCTAAACAATAAAGGCATGGCTGAAGCACTCTGCACTTATATTGAGAATGATCGCCCATTTTTAGGAATTTGTCTTGGGCTTCAACTACTCTTTGAATCAAGCGAGGAGAATGGACCAGTAAAAGGTCTTGGCTTAATACCGGGTGTGGTTGGGCGTTTTGACTCTTCCAATGGTTTTAGGGTACCCCATATTGGGTGGAATGCTCTGGAAATCTCTAAGGACTCTGAGATCTTGGATGATATTTCTAATCGACATGTCTACTTTGTTCACTCTTACCGTGCTATGCCATCAGATGAGAACAAGGAGTGGATCTCTTCTACTTGCAGCTATGGCGACAGGTTTATAGCTTCAGTTAGAAGGGGAAATGTCCATGCAGTTCAATTCCACCCAGAAAAGAGTGGAGATGTAGGTCTGTCTGTCCTAAGAAGATTCTTGTTTCCAAAGTCGACTGTCACCAAGAAGCCCAGTGAGGGAAAGGCTTCAAGGCTTGCAAAAAGGGTAATTGCTTGTCTTGACGTGCGAACAAATGACCAAGGGGACCTTGTTGTTACCAAAGGGGACCAATATGACGTAAGGGAGCAAACAGAAGAGAATGAGGTTAGGAACCTTGGCAAGCCGGTAGATCTTGCTGGACAGTACTACAAAGATGGAGCTGATGAGGTCAGTTTTTTGAATATAACTGGTTTCCGTGACTTCCCTCTGGGCGACTTGCCAATGTTGCAGGTGCTGAGATACACATCAGAAAATGTTTTTGTACCATTGACTGTTGGGGGTGGAATTAGAGATTTTAAGGATGCGAATGGCAGACACTATTCTAGCTTGGAAGTTGCTTCAGAATATTTCAGATCTGGAGCTGATAAAATATCTATTGGAAGCGATGCAGTTTATGCTGCTGAGGAATATTTAAGAACTGGCGTAAAGACGGGAAAGAGCAGCTTGGAGCAGATTTCTAAGGTTTATGGAAATCAGGCTGTTGTGGTTAGTATTGATCCTCGTAGAGTGTACCTTAAAAGTCCTGATGATGTGGAGTTCAAAGTTATACGAGTAACAAACCCAGGTCCTAATGGAGAAGAATATGCATGGTATCAGTGTACAGTTAACGGAGGTCGAGAAGGTCGACCAATTGGAGCTTATGAGCTTGCAAAAGCAGTAGAGGAGCTAGGAGCTGGAGAAATACTGTTAAACTGCATAGATTGTGACGGTCAAGGAAAAGGATTCGATATAGATCTAGTAAAGCTGATATCAGATTCTGTTAGCATACCCGTTATTGCCAGTAGTGGAGCTGGGTCTTCTGACCATTTCTCTGATGTGTTTAACAAAACGAATGCTTCTGCTGCTCTTGCTGCTGGAATTTTTCATCGTAAGGAGGTGCCGATTCAGTCCGTAAAAGAGCATTTATTAAAGGAAGGCATAGAAGTGAGAATCTAA 1785 43.75 MEAPPFAVAGSSSSSSSQIVFRSLSSSPRTSSLFFLPNSCYKTRHLKVKSSGKFAVRASFAGDSVVTLLDYGAGNVRSVRNAIRYLGFDIKDVQTPEDILNANRLIFPGVGAFAPAMDVLNNKGMAEALCTYIENDRPFLGICLGLQLLFESSEENGPVKGLGLIPGVVGRFDSSNGFRVPHIGWNALEISKDSEILDDISNRHVYFVHSYRAMPSDENKEWISSTCSYGDRFIASVRRGNVHAVQFHPEKSGDVGLSVLRRFLFPKSTVTKKPSEGKASRLAKRVIACLDVRTNDQGDLVVTKGDQYDVREQTEENEVRNLGKPVDLAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFKDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKSSLEQISKVYGNQAVVVSIDPRRVYLKSPDDVEFKVIRVTNPGPNGEEYAWYQCTVNGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIDLVKLISDSVSIPVIASSGAGSSDHFSDVFNKTNASAALAAGIFHRKEVPIQSVKEHLLKEGIEVRI 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8445424 8459042 - MC11g0992 Mch11g1201 680135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1201 594 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 282 594 IPR050064 GO:0000107(PANTHER)
Mch11g1201 594 Pfam Histidine biosynthesis protein 285 576 IPR006062 GO:0000105(InterPro)
Mch11g1201 594 CDD HisF 284 588 IPR004651 GO:0000105(InterPro)|GO:0000107(InterPro)
Mch11g1201 594 FunFam Imidazole glycerol phosphate synthase hisHF 61 286 - -
Mch11g1201 594 NCBIfam imidazole glycerol phosphate synthase subunit HisH 66 264 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Mch11g1201 594 CDD GATase1_IGP_Synthase 66 264 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Mch11g1201 594 FunFam Imidazole glycerol phosphate synthase hisHF 284 594 - -
Mch11g1201 594 Pfam Glutamine amidotransferase class-I 68 263 IPR017926 -
Mch11g1201 594 ProSiteProfiles CobBQ-type GATase domain profile. 57 256 - -
Mch11g1201 594 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 65 273 - -
Mch11g1201 594 PIRSF IGPS_HisHF 63 594 IPR014640 GO:0000105(InterPro)|GO:0000107(InterPro)|GO:0016763(InterPro)|GO:0016833(InterPro)
Mch11g1201 594 Gene3D Aldolase class I 287 594 IPR013785 -
Mch11g1201 594 NCBIfam imidazole glycerol phosphate synthase subunit HisF 282 593 IPR004651 GO:0000105(InterPro)|GO:0000107(InterPro)
Mch11g1201 594 SUPERFAMILY Class I glutamine amidotransferase-like 65 265 IPR029062 -
Mch11g1201 594 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 65 266 IPR010139 GO:0000105(InterPro)|GO:0016763(InterPro)
Mch11g1201 594 Gene3D - 62 286 IPR029062 -
Mch11g1201 594 SUPERFAMILY Ribulose-phoshate binding barrel 281 593 IPR011060 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1201 K01663 - - csv:101205184 1086.25
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g538 Blo03g00552 . Bda07g00369 . . . . . . . . Cma09g00961 Car01g00993 Car09g00876 Sed04g3225 Cpe06g00777 Cpe02g00781 Bhi09g01662 Tan01g4575 Cmetu01g2068 . . Mch11g1201 . . . . . . . . . . . . Lsi02g01893 Csa07g01105 . . . . . . Bpe11g00554 . . Bma14g00332 . Cmo01g01168 Cmo09g00961 . . . . . . . . . . . . . Cla09g01020 Cam09g1076 Cec09g1076 Cco09g1096 . . Cre09g1042 . . . Cme01g01017
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002500 2 3 2 2 2 1 4 2 1 3 1 1 2 2 1 4 1 4 3 2 2 2 2 2 1 1 2 2 1 1 59