Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1230 ATGGGAGTTCTCCAGACTCTGCAAAACATCGGCAGCGACCACGCCCAGGTTGTCCCCTTGACGCTGTTCGTCGCTGTTCTCTGTTTGTGTTTGGTCATTGGCCACTTGCTCGAAGAAAATCGATGGGTCAATGAATCCATCACCGCCATTATCATTGGAGGTATTACTGGATTGATCATATTGTTCAGTAGCGAGGGGAAAAATTCTCATATTCTAACTTTTAATGAAGAAGTGTTCTTCATATATCTCCTTCCGCCAATAATTTTCAATGCTGGATTTCAGGTGAAAAAGAAGCAGTTCTTCCATAACTTCTTGACCATTATGCTATTTGGGGTTGTTGGTGTTTTTATATCTGCACTCATCATAACGGCTGGCAGTCGGTGGCTGTTTCCCAGGATTGGCTTTCATGGTCTGTCGGTGCGGGACTATGTTGCTGTAGGTGCTATTTTTTCATCCACGGATACAGTATGCACCCTGCAGGTACTACATCAAGAGGAAACACCTTTACTATACAGCCTAGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTCCTCTTCAATGCAGTTCAGAAGATCGATATCACTAGGCTTAACAACAAGACAGCCCTTCATCTTTTTGGAGACTTTTGTTACTTATTTTCAACTAGCACTGTCCTTGGAGTGACGACTGGGCTTCTTACAGCATTTATTCTCAAATCCTTATACTTCGGGAGACATTCAAGTGTGCGTGAGCTTGCAATAATGGTTTTAATGGCTTACCTGTCGTACATGCTAGCAGAGCTACTGGAGTTGAGCGGAATTCTCACAGTTTTCTTTTGTGGGATTATCATGTCGCACTATGCATATTATAACGTTACTGATAGTTCAAGAATTACCACCAGGCAGCATGTATTTGCAATGATGTCATTTGTTGCCGAAACTGCAATATTTCTTTATGTGGGCATGGATGCTCTTGACATTGAAAAGTGGAAGATCACTAAATTAAGTTTGTGGAAGCTACTTGGTACGTACAGCACTATAATCTTCTTGATATTGCTTGGTCGTGTGGCCTTTGTATTTCCCCTATCTGCTATATCCAATTACTGCAATAAGCGTGAGGATAGATCATCGTCTTCTACGATCACGTTCAGACAACAGATCATAATATGGTGGGCTGGACTAATGAGAGGTGCTGTTTCCATTGCTCTGGCTTTCAAACAGTTCACATATTCTGGGGTTACGTTGGATCCGACACATGCAGCGATGATTACCAACACTACGGTTGTTGTACTCTTCACTACGGTGGTATTTGGATTTCTAACAAAGCCACTCATAAGATGTCTGCTTCCCCACAACCAAGAAACTAACCGTGCAAGCAATTCCGGACCGAAGTTCACAGAAGAGGATATAACTCTCCCTTTGCTCTCCATGGAAGAGTCTGCTGCAACCAACGTGCTTCGTGCAAAGGACAGTTTGTCGATGTTAATAGAGAGGCCTGTTTACACCATACATTACTTTTGGAGGAAATTTGATGATACCTACATGAGACCTCTATTTGGAGGGCCTCACAACAACCAACCCAGTCGCAACAACCAACCCAGTCATTCCAGATGTTAG 1605 43.05 MGVLQTLQNIGSDHAQVVPLTLFVAVLCLCLVIGHLLEENRWVNESITAIIIGGITGLIILFSSEGKNSHILTFNEEVFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMLFGVVGVFISALIITAGSRWLFPRIGFHGLSVRDYVAVGAIFSSTDTVCTLQVLHQEETPLLYSLVFGEGVVNDATSVVLFNAVQKIDITRLNNKTALHLFGDFCYLFSTSTVLGVTTGLLTAFILKSLYFGRHSSVRELAIMVLMAYLSYMLAELLELSGILTVFFCGIIMSHYAYYNVTDSSRITTRQHVFAMMSFVAETAIFLYVGMDALDIEKWKITKLSLWKLLGTYSTIIFLILLGRVAFVFPLSAISNYCNKREDRSSSSTITFRQQIIIWWAGLMRGAVSIALAFKQFTYSGVTLDPTHAAMITNTTVVVLFTTVVFGFLTKPLIRCLLPHNQETNRASNSGPKFTEEDITLPLLSMEESAATNVLRAKDSLSMLIERPVYTIHYFWRKFDDTYMRPLFGGPHNNQPSRNNQPSHSRC 534
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 8702967 8710886 - MC11g1018 Mch11g1230 680164
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1230 534 Gene3D - 139 191 - -
Mch11g1230 534 NCBIfam sodium/hydrogen exchanger 3 20 453 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch11g1230 534 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch11g1230 534 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch11g1230 534 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch11g1230 534 PRINTS Na+/H+ exchanger signature 147 157 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch11g1230 534 PANTHER SODIUM/HYDROGEN EXCHANGER 18 524 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(InterPro)|GO:0015385(PANTHER)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Mch11g1230 534 Pfam Sodium/hydrogen exchanger family 29 442 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1230 Mch-Chr11:8702967 Mch6g1633 Mch-Chr6:18003274 1.38E-209 dispersed
Mch11g1230 Mch-Chr11:8702967 Mch7g1138 Mch-Chr7:15254525 5.59E-204 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1230 - - - 0.0