Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1246 ATGAGTTGCTCACGGATTCGTAAAGAATCCGAAAAGCCGAACCTAAATTGGGAAGAGGCATTGAGGCAGTATCAAAATGTTATGGCTTCAGAATCCGAGGCTGTTAAAGTGAAAGCCACAGTCAAATTGGCTAATCTCTCTCAATGTGCCCCGGAGAATATCTTGAACAGCACTATACCCATTATCGCTAAGCATCTTGGAGATAACCCCATCACTAATTCGAGCCAGTCCATGCAAGGAGCTGCAGCATATTGTCTAAGACGCATATCTTGTCGAGGTGATGATGGTACGTTAGCCATGGCGGTAGGTAATTCCGGCGCTTTAGAGTCTTTGCTGAGGTTGTTGCCATATTCTAACGGTGGTTTCCGGAAGATTCTAGTTAAATGTGTTTGGAGTGTTGTTACTTTTGGTAAAACTAGTCGTGTGATTATAGCTAGGAATGGGGGTTTGGAAGTTATTATTGGTATGTTGGATTCTGTGATTGATGCTTCTAGAAGATATTTATTGGAGATTTTGAGTGCATTGGCACTATTGAGAGAGGTTAGGAAGGCCCTTATAAGTTTAAGAGGCCTCCCCTTTCTTGTGGAAGCTGCTAGATGCGGCTGCTTGGCCTCCAGAGAAAGAGCTTGCCAAGCAATTGGGTTACTTGCAATTACAAAGCGTGGAAGACGCATGCTTTTTGAGCTGGGAGTGGTGCCGGTGCTTATCGAGCTATTTCGTGGAGGGGATTGCACAACAAAACTTGTAGCAGGTAATTCCCTGGGAATAGTTTCAGCTCATGTAGCCTACATTAGGCCCGTTGCACAAGCTGGGGCTATCCCTTTGTTTGCTGATCTTCTTCAGTGGCCTAACCACCCTATTGGTAAGGAGATTGCTGAGGACGTCTTCTGTCTCTTAGCTGTTGCTGAGGAGAATGCAGTTGTAATTTCTGATCATTTAGTGAGAATTCTTAAAGAAGGTGATGATGAAGCAAAGGCTGCAGCTGCTGACGTTTTGTGGGATCTTTCAGGGTATAAGTACTCCATATCAACAGCACATAATTCAGGTGCCATTCCAGTTATGGTGGATCTATTACAGGACAGGAATAATGAAGTGAGGGAAAAAGTCTCTGGAGCTATAGCCCAATTAAGTTATAATGAGATTGATAGGGCTGCACTTGCTGATGCAGGGGCAATTGAACGATTAATCGAACTGTTGCAAGATGAGTTAGAAGAGCTGAAAGATAATGCTGCTGAGGCCCTTATAAATTTTTCTGAAGACCTCTTTTACTGTGGTAGAGTATCTGAAGCAGTCAGCACTCCTGCTTTCCGGAATATGCAGGAAAGAATGACCCATATTCGCACTACTGAACAGCACAGTATGAGGTCCCTGCGTCAAATGGGAATTGACCAACTTACAAGGGATCCAGATCTGTAA 1416 44.0 MSCSRIRKESEKPNLNWEEALRQYQNVMASESEAVKVKATVKLANLSQCAPENILNSTIPIIAKHLGDNPITNSSQSMQGAAAYCLRRISCRGDDGTLAMAVGNSGALESLLRLLPYSNGGFRKILVKCVWSVVTFGKTSRVIIARNGGLEVIIGMLDSVIDASRRYLLEILSALALLREVRKALISLRGLPFLVEAARCGCLASRERACQAIGLLAITKRGRRMLFELGVVPVLIELFRGGDCTTKLVAGNSLGIVSAHVAYIRPVAQAGAIPLFADLLQWPNHPIGKEIAEDVFCLLAVAEENAVVISDHLVRILKEGDDEAKAAAADVLWDLSGYKYSISTAHNSGAIPVMVDLLQDRNNEVREKVSGAIAQLSYNEIDRAALADAGAIERLIELLQDELEELKDNAAEALINFSEDLFYCGRVSEAVSTPAFRNMQERMTHIRTTEQHSMRSLRQMGIDQLTRDPDL 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8843623 8851236 - MC11g1031 Mch11g1246 680180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1246 471 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 354 419 - -
Mch11g1246 471 SUPERFAMILY ARM repeat 148 422 IPR016024 -
Mch11g1246 471 Gene3D - 8 165 IPR011989 -
Mch11g1246 471 Gene3D - 166 303 IPR011989 -
Mch11g1246 471 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 349 391 IPR000225 GO:0005515(InterPro)
Mch11g1246 471 MobiDBLite consensus disorder prediction 451 471 - -
Mch11g1246 471 Coils Coil 389 416 - -
Mch11g1246 471 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 390 418 IPR000225 GO:0005515(InterPro)
Mch11g1246 471 Gene3D - 304 433 IPR011989 -
Mch11g1246 471 SMART arm_5 45 91 IPR000225 GO:0005515(InterPro)
Mch11g1246 471 SMART arm_5 219 259 IPR000225 GO:0005515(InterPro)
Mch11g1246 471 SMART arm_5 260 301 IPR000225 GO:0005515(InterPro)
Mch11g1246 471 SMART arm_5 178 218 IPR000225 GO:0005515(InterPro)
Mch11g1246 471 SMART arm_5 338 378 IPR000225 GO:0005515(InterPro)
Mch11g1246 471 SMART arm_5 302 337 IPR000225 GO:0005515(InterPro)
Mch11g1246 471 SMART arm_5 379 419 IPR000225 GO:0005515(InterPro)
Mch11g1246 471 SMART arm_5 94 135 IPR000225 GO:0005515(InterPro)
Mch11g1246 471 Pfam HEAT repeats 311 414 - -
Mch11g1246 471 SUPERFAMILY ARM repeat 16 176 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1246 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g621 . . . . . . . . . . . . . . Sed04g3674 . . Bhi09g01736 Tan01g3167 Cmetu01g0479 . . Mch11g1246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012085 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 2 4 1 1 1 1 2 29