Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1249 ATGGCGGCGGTTACAATCTCCTCCGAGCCGGAGCCGGAGACAGAGCCGTTCGTGGAGGTGGATCCCACGGGCCGCTACGGCCGCTACAGCGAGCTGCTCGGCGCCGGCGCGGTGAAGAAAGTGTACAGAGCATTCGATCAGGAAGAAGGAATCGAAGTGGCGTGGAACCAGGTCAAGCTCCGGAGCTTCGCCCGCGATCCGGCGATGATCGACCGCCTCTTCTCGGAGGTTCATCTTCTCCGATCGCTGCAGAACGGCAACATCATCGCCCTGTACGACGTGTGGCGGGACAGCGAACACCAAACCCTAAATTTCATAACAGAGGTCTGCACCAGCGGGAATCTCAGAGAGTACCGGAAAAAGCACCGGCAGGTCTCGATCAAGGCGGTGAAGAAATGGGCGAGGCAGATCTTAAGGGGATTGGATTATTTGCATTCTCACGATCCCTGTATCATCCACAGAGATCTCAATTGCAGCAATGTCTTCGTCAACGGCCACATTGGGCAGGTGAAGATCGGCGATTTGGGGCTGGCAGCAACGGTGGGGAAGAGCCACTCGGCGCACTCAGTGATTGGGACGCCGGAGTTCATGGCGCCGGAGCTGTACGAGGAGGATTACACAGAGAAGGTGGACATCTACTCGTTTGGGCTGTGTGTGCTGGAGATGGTGACTCTGGAGATTCCGTACACTGAATGTGAGAATGTGGCAAAGATATACAAGAAGGTGTCGGCCGGAATTCGGCCGGCGGCGATGCAGAAAGTTGCAGATGGTGAAGTGAAGAGGTTCATTGACAAGTGCATTGGGCAGCCGAGGAGACGGCCGTCCGCGGCGGAGCTTCTTCTTGATCCATTCTTCCATGGAGTTGATGATGATGAAAATGATAGTTTTCAAGTTACAGAGTGA 903 55.48 MAAVTISSEPEPETEPFVEVDPTGRYGRYSELLGAGAVKKVYRAFDQEEGIEVAWNQVKLRSFARDPAMIDRLFSEVHLLRSLQNGNIIALYDVWRDSEHQTLNFITEVCTSGNLREYRKKHRQVSIKAVKKWARQILRGLDYLHSHDPCIIHRDLNCSNVFVNGHIGQVKIGDLGLAATVGKSHSAHSVIGTPEFMAPELYEEDYTEKVDIYSFGLCVLEMVTLEIPYTECENVAKIYKKVSAGIRPAAMQKVADGEVKRFIDKCIGQPRRRPSAAELLLDPFFHGVDDDENDSFQVTE 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8866974 8870240 + MC11g_new0216 Mch11g1249 680183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1249 300 SUPERFAMILY Protein kinase-like (PK-like) 21 292 IPR011009 -
Mch11g1249 300 Gene3D Transferase(Phosphotransferase) domain 1 110 290 - -
Mch11g1249 300 PIRSF TyrPK_CSF1-R 120 281 - -
Mch11g1249 300 PIRSF TyrPK_CSF1-R 28 132 - -
Mch11g1249 300 CDD STKc_WNK 25 285 - -
Mch11g1249 300 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Mch11g1249 300 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g1249 300 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 286 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Mch11g1249 300 FunFam probable serine/threonine-protein kinase WNK9 110 291 - -
Mch11g1249 300 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Mch11g1249 300 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1249 Mch-Chr11:8866974 Mch2g0481 Mch-Chr2:3481067 1.75E-160 dispersed
Mch11g1249 Mch-Chr11:8866974 Mch8g2922 Mch-Chr8:31967533 1.74E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77079 PF00069 Pkinase 1.70E-51 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1249 K08867 - rcu:8277577 483.026