Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g1249 | ATGGCGGCGGTTACAATCTCCTCCGAGCCGGAGCCGGAGACAGAGCCGTTCGTGGAGGTGGATCCCACGGGCCGCTACGGCCGCTACAGCGAGCTGCTCGGCGCCGGCGCGGTGAAGAAAGTGTACAGAGCATTCGATCAGGAAGAAGGAATCGAAGTGGCGTGGAACCAGGTCAAGCTCCGGAGCTTCGCCCGCGATCCGGCGATGATCGACCGCCTCTTCTCGGAGGTTCATCTTCTCCGATCGCTGCAGAACGGCAACATCATCGCCCTGTACGACGTGTGGCGGGACAGCGAACACCAAACCCTAAATTTCATAACAGAGGTCTGCACCAGCGGGAATCTCAGAGAGTACCGGAAAAAGCACCGGCAGGTCTCGATCAAGGCGGTGAAGAAATGGGCGAGGCAGATCTTAAGGGGATTGGATTATTTGCATTCTCACGATCCCTGTATCATCCACAGAGATCTCAATTGCAGCAATGTCTTCGTCAACGGCCACATTGGGCAGGTGAAGATCGGCGATTTGGGGCTGGCAGCAACGGTGGGGAAGAGCCACTCGGCGCACTCAGTGATTGGGACGCCGGAGTTCATGGCGCCGGAGCTGTACGAGGAGGATTACACAGAGAAGGTGGACATCTACTCGTTTGGGCTGTGTGTGCTGGAGATGGTGACTCTGGAGATTCCGTACACTGAATGTGAGAATGTGGCAAAGATATACAAGAAGGTGTCGGCCGGAATTCGGCCGGCGGCGATGCAGAAAGTTGCAGATGGTGAAGTGAAGAGGTTCATTGACAAGTGCATTGGGCAGCCGAGGAGACGGCCGTCCGCGGCGGAGCTTCTTCTTGATCCATTCTTCCATGGAGTTGATGATGATGAAAATGATAGTTTTCAAGTTACAGAGTGA | 903 | 55.48 | MAAVTISSEPEPETEPFVEVDPTGRYGRYSELLGAGAVKKVYRAFDQEEGIEVAWNQVKLRSFARDPAMIDRLFSEVHLLRSLQNGNIIALYDVWRDSEHQTLNFITEVCTSGNLREYRKKHRQVSIKAVKKWARQILRGLDYLHSHDPCIIHRDLNCSNVFVNGHIGQVKIGDLGLAATVGKSHSAHSVIGTPEFMAPELYEEDYTEKVDIYSFGLCVLEMVTLEIPYTECENVAKIYKKVSAGIRPAAMQKVADGEVKRFIDKCIGQPRRRPSAAELLLDPFFHGVDDDENDSFQVTE | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8866974 | 8870240 | + | MC11g_new0216 | Mch11g1249 | 680183 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g1249 | 300 | SUPERFAMILY | Protein kinase-like (PK-like) | 21 | 292 | IPR011009 | - | |
Mch11g1249 | 300 | Gene3D | Transferase(Phosphotransferase) domain 1 | 110 | 290 | - | - | |
Mch11g1249 | 300 | PIRSF | TyrPK_CSF1-R | 120 | 281 | - | - | |
Mch11g1249 | 300 | PIRSF | TyrPK_CSF1-R | 28 | 132 | - | - | |
Mch11g1249 | 300 | CDD | STKc_WNK | 25 | 285 | - | - | |
Mch11g1249 | 300 | Gene3D | Phosphorylase Kinase; domain 1 | 11 | 108 | - | - | |
Mch11g1249 | 300 | ProSiteProfiles | Protein kinase domain profile. | 27 | 285 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch11g1249 | 300 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 12 | 286 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Mch11g1249 | 300 | FunFam | probable serine/threonine-protein kinase WNK9 | 110 | 291 | - | - | |
Mch11g1249 | 300 | FunFam | Probable serine/threonine-protein kinase WNK1 | 12 | 108 | - | - | |
Mch11g1249 | 300 | Pfam | Protein kinase domain | 30 | 285 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g1249 | Mch-Chr11:8866974 | Mch2g0481 | Mch-Chr2:3481067 | 1.75E-160 | dispersed | |
Mch11g1249 | Mch-Chr11:8866974 | Mch8g2922 | Mch-Chr8:31967533 | 1.74E-117 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77079 | PF00069 | Pkinase | 1.70E-51 | CL0016 | Mch | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g1249 | K08867 | - | rcu:8277577 | 483.026 |