Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1253 TTTGTTCTGTTGGGTGTCGCCGGCGGCGGTCGAACAGAGAGATACGCCATCGGTTGGGATGATTTGCATATCGATGCTCGCCGGCAGGGGCTGAACTCCGGCGACAACGGCGGCACTCGGATTATTGTGGTGGATAAAAATTGCTCCGGCGACTCGCCGACGGTCCAAGGGGCGGTGGATTTGGTTCCTCATTATAATAAACAGAGAGTCAAGATTTATATTCTTCCCGGAATTTACAGAGAGAAAGTAACTATACCAAGCACCAAGCCATACATTTCACTGATAGGAAACAAACGACGAGTCACAGACACTATCATTACATGGAATGACAAGGCATCCGATAGAGATATCAATGGAGGTGAACTCGGGACATATAGAACAGCGACTGTTTCGGTCGAATCTGACTATTTTTGTGCAACAGGAATCACGTTCGAAAATACAGTGGTTGCTGAGCCAGGAGACAGTGGAAGACAGGCAGTGGCTCTAAGAATTGCAGGAGATAAGGCAATGTTTTACAGAGTCAAATTCATAGGACAACAAGATACACTCTTGGATGACATAGGCACTCACTATTTCTACCAATGCCACATTCAAGGAAGCGTCGATTTCATATTTGGGAGAGCTAGATCGCTCTACGAGCAATGTATTATAAGTTCCACAGCTGAGAACTATGGAGCAATAGCAGCACATCATCGGGACTCGGCAGAAGAAGAAACTGGGTTCTCTTTCGTACACTGCGTAATCAATGGAAGTGGCAAAATACTCCTGGGAAGAGCATGGGGAAACTATTCAAGAACAATATATTCTTACTGTTACATTCAAGATATAATAACTCCCACAGGATGGAGTGACTGGGGTGACCCATCAAGGCAAAGGACAGTAGTTTTTGGGCAGTATAATTGCAGAGGCAGTGGAGCTAACACACAAGGGTGGGTGCCATGGGCAAAGACTTTCAGCTATGAGGAAGTAAGACCTTTTCTAGATATGAAATTCATCAATGGAGAACAATGGCTTGACTTATGA 1023 45.16 FVLLGVAGGGRTERYAIGWDDLHIDARRQGLNSGDNGGTRIIVVDKNCSGDSPTVQGAVDLVPHYNKQRVKIYILPGIYREKVTIPSTKPYISLIGNKRRVTDTIITWNDKASDRDINGGELGTYRTATVSVESDYFCATGITFENTVVAEPGDSGRQAVALRIAGDKAMFYRVKFIGQQDTLLDDIGTHYFYQCHIQGSVDFIFGRARSLYEQCIISSTAENYGAIAAHHRDSAEEETGFSFVHCVINGSGKILLGRAWGNYSRTIYSYCYIQDIITPTGWSDWGDPSRQRTVVFGQYNCRGSGANTQGWVPWAKTFSYEEVRPFLDMKFINGEQWLDL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8910276 8913830 + MC11g1036 Mch11g1253 680187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1253 340 SUPERFAMILY Pectin lyase-like 40 339 IPR011050 -
Mch11g1253 340 Pfam Pectinesterase 42 334 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch11g1253 340 ProSitePatterns Pectinesterase signature 2. 197 206 IPR033131 -
Mch11g1253 340 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 40 339 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Mch11g1253 340 Gene3D - 38 340 IPR012334 -
Mch11g1253 340 FunFam Pectinesterase 37 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1253 Mch-Chr11:8910276 Mch6g1745 Mch-Chr6:19872971 9.35E-103 dispersed
Mch11g1253 Mch-Chr11:8910276 Mch8g0781 Mch-Chr8:5514635 6.58E-88 transposed
Mch11g1253 Mch-Chr11:8910276 Mch2g1109 Mch-Chr2:7523865 6.78E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1253 K01051 - csv:101209316 566.229