Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1260 ATGGAGGGAAAGCGAGCAAGCTCGGAGAGAAGCGACATTCTAAGAAGAATCAGAGAGATAACAAGATCTATGATCGTCGAGCTGAGCAACGGAAGCTCCAAGATGATGGCAATCGATCGGTTTAAAAATTACTGCACTAATTCTCTTGAAAACTGCTGTTGCAAGTTCAATTTATCCGAAGGGAAGGAGATTCTAACACTTCAAAAGGAAAGCCATGTCCGTAGACTAGATGTCTTGCTTAGAGTTCTACTCATTGTTCGGCAGCTTCTGCGAGAAAATAGACATAGCTCGAAGAGAGATATATATTATATGCATCCCTCTGTGTTTTCAGATCAGTCAGTTGTTGATCGGGCAATCAACGACATCTGCATTCTTTTGCAATGTAGTCGGCACAATCTAAATGTGGTTTCTTTTGGAAATGGGTTAGTGATGGGTTGGTTGAGGTTCTCAGAAGCTGGTAGGAGATTTGATTGCATAAAGAAGCCTAACAGTGCCCACTCCATTCCTGTTCAAGTTGAGGAAGTCACAGACATTGTTAGTGCTGCGGAATACATACTCATCGTTGAGAAGGAATCAGTTTTCCAGCGTTTAGCAAATGACCAGTTCTGCAGCAGAAACCGCTGCATTGTAATCACGGGACGTGGATATCCAGATGTTCCCACCAGAAGGTTTTTGCGGCTTCTCGTTGATGTTTCGGCATTGCCTGCATTTTGCTTGGTAGATTGTGATCCATATGGTTTCGAAATTCTAACAACATATCGATTTGGTTCCATGCAAATGGCGTACGATGCAAAGTATCTCAGAATTCCACATCTACGCTGGCTTGGTGCTTTTGCTTCAGACTCTGAGAATTACAATCTTCCAGAACAATGTCTCATCCCATTGACTATGGAGGATAAGAGAAGAACCGAAGCCTTGTTACTCAGATGCTACTTGCAGAGAGAGGTACCACATTGGAGGTTGGAATTGGACTCAATGCTGCAAAAGGGTGTGAAATTTGAGATAGAAGCCCTCTCTGTGCACAATCTTTCCTTTTTGTCAGAAGAGTATTTACCATCCAAAATAGGATGTGTTCATCTTAGAACTGGTAAA 1092 42.49 MEGKRASSERSDILRRIREITRSMIVELSNGSSKMMAIDRFKNYCTNSLENCCCKFNLSEGKEILTLQKESHVRRLDVLLRVLLIVRQLLRENRHSSKRDIYYMHPSVFSDQSVVDRAINDICILLQCSRHNLNVVSFGNGLVMGWLRFSEAGRRFDCIKKPNSAHSIPVQVEEVTDIVSAAEYILIVEKESVFQRLANDQFCSRNRCIVITGRGYPDVPTRRFLRLLVDVSALPAFCLVDCDPYGFEILTTYRFGSMQMAYDAKYLRIPHLRWLGAFASDSENYNLPEQCLIPLTMEDKRRTEALLLRCYLQREVPHWRLELDSMLQKGVKFEIEALSVHNLSFLSEEYLPSKIGCVHLRTGK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8945555 8949095 + MC11g1041 Mch11g1260 680194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1260 364 Gene3D - 140 358 - -
Mch11g1260 364 PRINTS DNA topoisomerase VI subunit A family signature 112 129 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Mch11g1260 364 PRINTS DNA topoisomerase VI subunit A family signature 130 145 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Mch11g1260 364 PRINTS DNA topoisomerase VI subunit A family signature 241 257 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Mch11g1260 364 PRINTS DNA topoisomerase VI subunit A family signature 209 230 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Mch11g1260 364 PRINTS DNA topoisomerase VI subunit A family signature 98 109 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Mch11g1260 364 PRINTS DNA topoisomerase VI subunit A family signature 185 202 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Mch11g1260 364 FunFam DNA topoisomerase 6 subunit A 139 360 - -
Mch11g1260 364 Gene3D - 1 137 IPR036388 -
Mch11g1260 364 SUPERFAMILY DNA topoisomerase IV, alpha subunit 73 355 IPR036078 GO:0003677(InterPro)|GO:0005694(InterPro)
Mch11g1260 364 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 9 355 IPR002815 GO:0000228(PANTHER)|GO:0000706(PANTHER)|GO:0003677(InterPro)|GO:0003677(PANTHER)|GO:0003918(InterPro)|GO:0005694(InterPro)|GO:0007131(PANTHER)|GO:0042138(PANTHER)
Mch11g1260 364 Pfam Topoisomerase 6 subunit A/Spo11, Toprim domain 184 355 IPR034136 -
Mch11g1260 364 PRINTS SPO11 homologue signature 246 265 IPR013048 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0042138(InterPro)
Mch11g1260 364 PRINTS SPO11 homologue signature 342 361 IPR013048 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0042138(InterPro)
Mch11g1260 364 PRINTS SPO11 homologue signature 104 124 IPR013048 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0042138(InterPro)
Mch11g1260 364 PRINTS SPO11 homologue signature 199 214 IPR013048 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0042138(InterPro)
Mch11g1260 364 PRINTS SPO11 homologue signature 281 305 IPR013048 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0042138(InterPro)
Mch11g1260 364 CDD TOPRIM_TopoIIB_SPO 183 345 IPR034136 -
Mch11g1260 364 Pfam Type IIB DNA topoisomerase 74 135 IPR013049 GO:0003677(InterPro)|GO:0003824(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0006259(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1260 K10878 - - csv:116405046 598.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1260 Mch-Chr11:8945555 Mch1g0775 Mch-Chr1:11463845 1.82E-68 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g649 . Blo03g01480 . . . Bpe08g01095 . . . . . Cma09g01003 . Car09g00914 . Cpe06g00811 . Bhi09g01751 . . . . Mch11g1260 . . . . . . . . . . . . Lsi02g01841 Csa07g00937 . . . . . . . . Bma07g01249 . . . Cmo09g01003 . . . . . . . . . . . . . Cla09g02064 Cam09g2153 Cec09g2218 . . . . . . Chy01g01164 Cme01g00928
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005619 0 4 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 3 1 1 40