Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1262 ATGGCTAGCAAGGAAGCAAGACAGCCACTGCTATCAACGTCATCTAATACTTCTAGAACAAGGTTAATAGATATTCCTAGAAGCAAAAGACGACTGAGGCGCTCTAAGAGTGCTCCTCATGGTGATTACGCTCTTCCAGAGACCACCAGCACGTGCACTGGCACAGCCACTGGTTCAGTTCCACGTTCAGGATTTGTTTTTGGAAATCTACACCCGAGTCTTAGAAGGGTAGCCATAGTTTTAACAGTCTACTTGGGTATAGGAACTTTATGTTTTTACCTTGCCAGGAACCAAATCAAAGGGGAAAAAACAAACGGAATAGTTGATGCCATTTATTTCACAATTGTGACAATGACAACCGTTGGATACGGAGATCTTGTCCCGAACAGTCCCGGTGCAAAGCTACTGGCTTGTTCTTTTGTTTTCACAGGAATGGCTCTTATTGGTCTAATACTAAGCAATGCAGCTGACTATTTGGTAGAGAAGCAGGAAATCATGCTATTTAATGCCTTGCATACGTACCAAAATCCTGGCCCTTGTGACACCACAAAAGAATATGATACTAATAAAGCTAGAAACAAGTGTATAGTGGTGTTTCTCCTTCTTCTTTTCTTCATCATTTCGGGGACTACCTTACTAGTTACCCTTGAGAAGTTAGATCTCATTGATGCATTTTATTGTGTATGTTCTACCATCACCACCCTAGGCTATGGTGATAAAAGCTTCTCAACCAGGTGGGGGCGTGTGTTCGCCATTTTCTGGATTTTGATAAGTACCATCACTCTGGCACAATTTTTCCTTTACATTGCTGAGCTAAACACTGAAAGAAGACAAAGGTCATTGGTAAAGTGGGTTCTAAGTAGAAAGGTGACCGACATAGACCTCGAGGCAGCGGATATTGATGACGACGGGGTCGTCGGGGCTGCAGAATTTGTCATATACAAGCTGAAAGAGATGGGGAAAATTACTGAAGATGACATTTCACCTGTGCTGAAGGAGTTCGAGGATCTTGATTTTGATCAATCAGGAACCTTGTCCATATCCGATATAACACTTGCCCAATTGTCTTAA 1071 42.39 MASKEARQPLLSTSSNTSRTRLIDIPRSKRRLRRSKSAPHGDYALPETTSTCTGTATGSVPRSGFVFGNLHPSLRRVAIVLTVYLGIGTLCFYLARNQIKGEKTNGIVDAIYFTIVTMTTVGYGDLVPNSPGAKLLACSFVFTGMALIGLILSNAADYLVEKQEIMLFNALHTYQNPGPCDTTKEYDTNKARNKCIVVFLLLLFFIISGTTLLVTLEKLDLIDAFYCVCSTITTLGYGDKSFSTRWGRVFAIFWILISTITLAQFFLYIAELNTERRQRSLVKWVLSRKVTDIDLEAADIDDDGVVGAAEFVIYKLKEMGKITEDDISPVLKEFEDLDFDQSGTLSISDITLAQLS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8963483 8967117 + MC11g1043 Mch11g1262 680196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1262 356 SUPERFAMILY Voltage-gated potassium channels 189 294 - -
Mch11g1262 356 PRINTS Two pore domain K+ channel signature 233 242 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Mch11g1262 356 PRINTS Two pore domain K+ channel signature 116 144 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Mch11g1262 356 Gene3D - 181 292 - -
Mch11g1262 356 SUPERFAMILY EF-hand 285 351 IPR011992 -
Mch11g1262 356 MobiDBLite consensus disorder prediction 1 22 - -
Mch11g1262 356 SUPERFAMILY Voltage-gated potassium channels 71 166 - -
Mch11g1262 356 Gene3D - 71 165 - -
Mch11g1262 356 ProSitePatterns EF-hand calcium-binding domain. 299 311 IPR018247 -
Mch11g1262 356 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 77 324 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(PANTHER)|GO:0071805(InterPro)
Mch11g1262 356 Pfam Ion channel 79 160 IPR013099 -
Mch11g1262 356 Pfam Ion channel 201 274 IPR013099 -
Mch11g1262 356 FunFam Calcium-activated outward-rectifying potassium channel 1 71 166 - -
Mch11g1262 356 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1262 Mch-Chr11:8963483 Mch3g0736 Mch-Chr3:11629635 5.62E-118 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1262 K05389 - csv:101216032 541.576