Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1292 ATGGCTGCCGCCAAGTTCAACAAGAAGAAGGGTGTGAAACGGAACGACCCACCATCAAAAACAAAGAAAAAGGAAGAGCTCTTTACGGCAAAGCGGTCTAAGGAGGAGGAGGAGAATGATTCTGACCTTTCTGATGGTCTAGGCGATGCAGAAGTTGAGAATGGAGTGCTTGATGATGATGACGGATTTGGGTCTGGTTCTGAAGTTTCTTCTGATGGTGATGATCCCTTGGCCGATGATTTCCTCCAAGGAAGCGACGAAGAGAATGGTTCGGGATCAGGTTCGGGATCAGTTTCGGGTTCTGATTCCGATGAAGACGATATCGTAAATAAGTCAAGAGCCATCGATGAAGAAAGGGCGAGGGTAGAGAAAGAAGCAGAGGATGAAATGAAGCTCAATATTAGAGAAGAATCCGATGAGTTCAGATTACCAATTAAGGAGGAACTTGAAGAAGAAGTGCTTAGGCCTCCTGACCTTTCAAATTTACAAAGGCGGATAAGAGAGATTGTTCGAGTGCTTACGAATTTCAAGGCTTTGAGGCAAGAGGGAGCAACCCGGAAGGATTATGTTGAGCAACTTAAGAAAGACATAGGTTCATACTATGGCTATAACGAATTCCTTACTGGGGTTCTAATGGAGTTGTTTCCAGTTATTGAGCTAATGGAACTTATTGAAGCTTTTGAAAAGCCTAGACCAATATGTTTGCGGACTAACACCTTAAAGACAAGAAGGCGGGATTTGGCAGATGTTCTGATTAATAGAGGTGTGAACCTGGATCCATTAAGCAAGTGGTCAAAGGTTGGACTTGTTGTATATGATTCCCAAGTGCCAATTGGAGCAACTCCTGAATATATGGCAGGTTTTTACATGCTACAAGGTGCAAGCTCCTTTCTGCCTGTGATGGCCCTTGCTCCTCAGGAAAAGGAACGAATCATTGACATGGCGGCTGCTCCTGGTGGTAAAACTACTTACATAGCAGCACTCATGAAAAATAGTGGAATAATATTTGCCAATGAGATGAAAGCACCAAGACTGAAGTCTCTCACTGCAAATCTACATCGGATGGGAGTGACAAATACTGTTGTCTGTAGCTACGACGGGAAGGAGCTCCCGAAAGTAATGGGCACGAATACGGCCGATAGAGTTCTATTAGATGCTCCTTGCAGTGGATCTGGAGTTGTATCTAAGGATGAATCTGTTAAAACCTCAAAAAGCGTAGAAGAAATCCAGAAATGTTCCAAGTTGCAGAAGGAACTTATTCTTGCTGCAATTGACATGGCTGATGCAAATTCAAAATCTGGGGGTTATGTTGTTTACTCCACATGCTCCATAATTGTTGATGAGAATGAAGCAGTAATTGATTATGCACTAAAAAAGCGGGATGTGAAACTTGTTCCATGCGGCCTTGATTTTGGACGTCCTGGGTTTATCCGGTTCAGGGAAAAACGTTTTCACCCATCCTTAGAGAAGACAAGACGTTTCTACCCCCACGTCCACAACATGGACGGTTTTTTTGTGGCAAAGTTGAAGAAAATGAGCAACAAGATACCAACTGCAGAATCTTCTGATCCATTGGAAACGGCAATGGAAGAAGATAATGAGTCGGACAAGAGTGAAAATGAGGAGAATGATGGTGAATGTCTTCATCCACGCAAAGAACAAGTAGAAGGTAAAAAGAGGAAGGAGGTTTTGCAAAACCACGATGTTGAAAATGGCGAAGAGTCAACGCCCGCTACGGAAAAGAGGAAGAAAAGAAAATTCCCTTCAAGAATGGAAATCTCAAAAGCTAGGGAAGAGAAACGACAAGCTTTGAGAGAAAAGAAAGCAGGGGGCAAGAAAGGGTAA 1845 43.2 MAAAKFNKKKGVKRNDPPSKTKKKEELFTAKRSKEEEENDSDLSDGLGDAEVENGVLDDDDGFGSGSEVSSDGDDPLADDFLQGSDEENGSGSGSGSVSGSDSDEDDIVNKSRAIDEERARVEKEAEDEMKLNIREESDEFRLPIKEELEEEVLRPPDLSNLQRRIREIVRVLTNFKALRQEGATRKDYVEQLKKDIGSYYGYNEFLTGVLMELFPVIELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQGASSFLPVMALAPQEKERIIDMAAAPGGKTTYIAALMKNSGIIFANEMKAPRLKSLTANLHRMGVTNTVVCSYDGKELPKVMGTNTADRVLLDAPCSGSGVVSKDESVKTSKSVEEIQKCSKLQKELILAAIDMADANSKSGGYVVYSTCSIIVDENEAVIDYALKKRDVKLVPCGLDFGRPGFIRFREKRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNKIPTAESSDPLETAMEEDNESDKSENEENDGECLHPRKEQVEGKKRKEVLQNHDVENGEESTPATEKRKKRKFPSRMEISKAREEKRQALREKKAGGKKG 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9141207 9147183 - MC11g1071 Mch11g1292 680226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1292 614 Gene3D Sun protein; domain 3 189 296 - -
Mch11g1292 614 MobiDBLite consensus disorder prediction 9 39 - -
Mch11g1292 614 FunFam Ribosomal RNA methyltransferase Nop2 190 296 - -
Mch11g1292 614 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 242 255 IPR023273 GO:0008168(InterPro)
Mch11g1292 614 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 219 231 IPR023273 GO:0008168(InterPro)
Mch11g1292 614 PRINTS RNA (C5-cytosine) methyltransferase NOP2 subfamily signature 186 206 IPR023273 GO:0008168(InterPro)
Mch11g1292 614 Pfam 16S rRNA methyltransferase RsmB/F 300 510 IPR049560 -
Mch11g1292 614 Gene3D Vaccinia Virus protein VP39 299 606 IPR029063 -
Mch11g1292 614 PRINTS RNA (C5-cytosine) methyltransferase signature 283 297 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Mch11g1292 614 PRINTS RNA (C5-cytosine) methyltransferase signature 494 511 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Mch11g1292 614 PRINTS RNA (C5-cytosine) methyltransferase signature 434 450 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Mch11g1292 614 PRINTS RNA (C5-cytosine) methyltransferase signature 312 322 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Mch11g1292 614 PRINTS RNA (C5-cytosine) methyltransferase signature 380 392 IPR023267 GO:0001510(InterPro)|GO:0008173(InterPro)
Mch11g1292 614 MobiDBLite consensus disorder prediction 516 614 - -
Mch11g1292 614 MobiDBLite consensus disorder prediction 40 58 - -
Mch11g1292 614 MobiDBLite consensus disorder prediction 542 606 - -
Mch11g1292 614 MobiDBLite consensus disorder prediction 86 103 - -
Mch11g1292 614 NCBIfam NOL1/NOP2/sun family putative RNA methylase 235 511 IPR011023 GO:0003723(InterPro)|GO:0006396(InterPro)|GO:0008757(InterPro)
Mch11g1292 614 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 197 511 IPR029063 -
Mch11g1292 614 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 67 515 IPR023267 GO:0000470(PANTHER)|GO:0001510(InterPro)|GO:0001510(PANTHER)|GO:0005730(PANTHER)|GO:0008173(InterPro)|GO:0009383(PANTHER)|GO:0070475(PANTHER)
Mch11g1292 614 MobiDBLite consensus disorder prediction 104 126 - -
Mch11g1292 614 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 223 512 IPR001678 GO:0008168(InterPro)
Mch11g1292 614 MobiDBLite consensus disorder prediction 1 126 - -
Mch11g1292 614 MobiDBLite consensus disorder prediction 525 541 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1292 K14835 - - csv:101211286 970.689
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0908 Mch-Chr11:6171156 Mch11g1292 Mch-Chr11:9141207 4.01E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g696 . . Bda07g00417 . . . . . . . . . Car01g00943 . Sed04g3639 . . Bhi09g01791 Tan01g3207 Cmetu01g1798 . . Mch11g1292 . . . . . . . . . . . . . . . . . . . . Bpe11g00594 . . . . . . . . . . . . . . . . . . . Cla09g02088 Cam09g2175 Cec09g2241 . . . . . . Chy01g01130 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004303 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 3 4 0 1 2 1 2 42