Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1300 ATGATTCATTCTGGTTTCTTCCTTTCTGGTCCATCATTTAATTCCGATGCTACTACTTCTTTTATTTCGATTTCGGTGTCTGAAGATGATGGCGCCACGGCTGACGATATCAGAAATGAGACATCTGATTCCCTCCCCCCTTCTTTCTGGGTTAGAACAGCGATGAAAGCATCAAGAGCCAGATGGTTCATTTTCTTGAGAAGAGTTTTCCACTACCAGAACGGATCGAGATCTGATCTTGGGCCAAATCCTTTCAATTCAAGTGCGTGGATGGCGATGGAGCTTGTAGCTCTGTTGTTTCAGCTGATCATCTCAGTGTTTACTCTTGCTATTTCACAGACTGAGAGGCCAGTTTGGCCTATGAGATTGTGGATAGGTGGTTATGATCTTGGCTGCCTTCTTAGCCTATTGCTTCTCTACGGCCGCTATCGGTATCTCTATCTAATGCAAGGAGATGGTAACAGCCTTTTGGATATTGAACAGCAGAGAAGCAATGAATCGTCGAGGTACTCACATTTGACGAACAAATGTCGGACGTTACTCGAACTTTTCTTTGCGATATGGTTCGTAATGGGTAATCTTTGGGTCTTCGATTCTCGCTTTGGCTCGTTCCAAAGAGCTCCCAAGCTACATCTCCTATGCAGCATCCTGCTAGTTTGGAATGCCATCTGCTACTCTTTCCCATTCATTCTGTTTCTGCTGCTATGTTGCTGTGTGCCATTGATTAGTAGCCTTATAGGATATAACATGAACATGGGATCAACCGAAAAAGGAGCGTCAGATGATCAAATTTCCCAGCTACCATCCTGGAGATACAAAGCAGTTGACTCCAACATCAAACCTGGAAATCAACCTGATAGCCATACAGGACCCCCAAAAGAGGATCCAGAATGTTGCATTTGTCTTGCCAAGTACAAAGACAAAGAAGAAGTGAGACAGTTGCCCTGTTCTCATGTGTTTCATCAAAAGTGTGTAGATAAGTGGCTTGCTATTACATCTTCGTGCCCTCTCTGCAAGCAACAACTTCAAAGATAG 1035 43.86 MIHSGFFLSGPSFNSDATTSFISISVSEDDGATADDIRNETSDSLPPSFWVRTAMKASRARWFIFLRRVFHYQNGSRSDLGPNPFNSSAWMAMELVALLFQLIISVFTLAISQTERPVWPMRLWIGGYDLGCLLSLLLLYGRYRYLYLMQGDGNSLLDIEQQRSNESSRYSHLTNKCRTLLELFFAIWFVMGNLWVFDSRFGSFQRAPKLHLLCSILLVWNAICYSFPFILFLLLCCCVPLISSLIGYNMNMGSTEKGASDDQISQLPSWRYKAVDSNIKPGNQPDSHTGPPKEDPECCICLAKYKDKEEVRQLPCSHVFHQKCVDKWLAITSSCPLCKQQLQR 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9189657 9193066 + MC11g1076 Mch11g1300 680234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1300 344 CDD RING-H2_EL5-like 297 338 - -
Mch11g1300 344 Pfam Ring finger domain 297 339 IPR001841 -
Mch11g1300 344 ProSiteProfiles Zinc finger RING-type profile. 298 339 IPR001841 -
Mch11g1300 344 SMART ring_2 298 338 IPR001841 -
Mch11g1300 344 SMART ringv_2 297 339 IPR011016 GO:0008270(InterPro)
Mch11g1300 344 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 18 343 - -
Mch11g1300 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 343 IPR013083 -
Mch11g1300 344 SUPERFAMILY RING/U-box 294 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1300 Mch-Chr11:9189657 Mch8g0405 Mch-Chr8:2885516 5.10E-56 dispersed
Mch11g1300 Mch-Chr11:9189657 Mch11g1301 Mch-Chr11:9197287 3.60E-185 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1300 - - - 0.0