Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1301 ATGATCAGTTCTGGTTATTTCATTTCGGGTCCGTTGTGTAACTGCGGCGGCACTGCTTCCTTTATATCAAATTCGTTGGCGGAAGAAGATGGTGCTGCTGCGGTTGTTAGAGACGACAATTCTGTTGCTCTCCCTGCATCTTTCTGGGTTCGGACGGCCATGAGAGTGTCTAGAGCCAGGTGGTTTGTTTTCTTAAGAAGGGTGTTTCACTACCAGAACGGATCAAGAACAGATCTCGGGTCTGATCCTTTCAATTCTAGCTCATGGATGGCGATGGAGCTGGTCGCTATGGTGTTTCAGCTGGCCATCACCTTTTTTTTTCTTGCCATTTCAGAGGCTGAGAAGCCAGTTTGGCCTATGAGATTGTGGATTGTTGGTTATGACCTTGGCTGCGCTCTTAGTTTGTTGCTTCTATATGGCCGCTTTTCGCATCTTTATCCAATGCGTGGAGATCGTGTTAGCCTTTCTGATACTGAGCAGCGGAGAAGCAGTCAAGCATCAAGGAGCTTGCGTTTGATGAACAAATGTCGATCATCTCTCGAACTTTTCTTTGCAATATGGTTCGTAATGGGTAATGTCTGGATCGTCGATTCTCGCTTCAGTTCTTTCCAAAGAGCTCCCAAGCTTCATCTGTTATGTGTCTTCCTGTTGGTTTGGAATGCCATCTGCTACTCTTTTCCATTCATTCTTTTTCTGCTGCTATGTTGCTGTGTGCCGTTGATTAGTGGCCTTCTAGGATATAACATTAACACAGCGTCGACCGACAAAGGCGCGTCCGAGGATCAAATTTCCCAGCTACCTTGCTGGAGATATAAAGCAAGCTCAAAGCAACTTGATAGCAACAAGGGACTTCCAAAAGAGGATCCAGAATGTTGCATCTGCCTTGTGAAGTACAGAGATGAAGAAGAAGTAAGACAGTTGCCTTGTTCCCATTTGTTTCATCTCAAGTGTGTAGATAAGTGGCTTGCTATCACATCTTCCTGCCCTCTCTGTAAGCAACAACTT 1005 45.47 MISSGYFISGPLCNCGGTASFISNSLAEEDGAAAVVRDDNSVALPASFWVRTAMRVSRARWFVFLRRVFHYQNGSRTDLGSDPFNSSSWMAMELVAMVFQLAITFFFLAISEAEKPVWPMRLWIVGYDLGCALSLLLLYGRFSHLYPMRGDRVSLSDTEQRRSSQASRSLRLMNKCRSSLELFFAIWFVMGNVWIVDSRFSSFQRAPKLHLLCVFLLVWNAICYSFPFILFLLLCCCVPLISGLLGYNINTASTDKGASEDQISQLPCWRYKASSKQLDSNKGLPKEDPECCICLVKYRDEEEVRQLPCSHLFHLKCVDKWLAITSSCPLCKQQL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9197287 9199396 + MC11g1077 Mch11g1301 680235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1301 335 ProSiteProfiles Zinc finger RING-type profile. 291 332 IPR001841 -
Mch11g1301 335 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 44 334 - -
Mch11g1301 335 SMART ring_2 291 331 IPR001841 -
Mch11g1301 335 Pfam Ring finger domain 290 332 IPR001841 -
Mch11g1301 335 SUPERFAMILY RING/U-box 285 334 - -
Mch11g1301 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 335 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1301 Mch-Chr11:9197287 Mch8g0405 Mch-Chr8:2885516 4.33E-54 dispersed
Mch11g1300 Mch-Chr11:9189657 Mch11g1301 Mch-Chr11:9197287 3.60E-185 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1301 - - - 0.0