Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1304 ATGGGAAAGAGAAGAGAGCGTCGCCTCGCTGCTCTCAGTAACGCCGGTCGCCGTGTCAAGCTTGATCTTTTCGCCGAGCCCTCTGGAGATTTAGATGGCTCTGATGTACATGAAGATGTTGGAGGAGATATAGATTCAAAACAGACGACCAAGTTACCCAAATCAGCATCCTCTTCAGGTCACCAAGCACAAAATCCCTTGCTGTTACTTGAGCAATATAGTGATGATGAAGTTGATGAGGACTTGAATAAAAATTCAGATCATGATGGACAGGATGATTTGTTACCTGACCACAATGATGAGATTGCCTCTGCCCCTGTTGAGGTTTGTGAGAATATGGATGCAAATGTTGGTGAAGACCATACTGCCCAAAAGGCTATACAAGAGGAGCCAGAGGGAGGTTTTGTTGATTTTTCTGGGAACTCGGAAAGCAGAGATGAAGTAAAAACTGACACAAATACCTTGGGCTCTTTAAGCGCAGAAACCAATTTGGTTCAAACATCTGTTCCTGCAACATCTAACGTACAAGATGCTGGAGATGTTGGTTCAGGATGGCGAGTTGTAATGCATGAGGAGAGCCATAACTATTACTACTGGAATGTTGAAACAGGGGAAACTTCATGGGAAGTACCCGATGCTGTTTTGGCTCAGGCTCAATCCACTCAATCAACCACTGATATTAAAACTTCTACTCAAGTTCCAGAGAACGTTGCAGTCGTTAAACAGGAATCTGGTTTAACTAATGGTGGGAAGTTAGATGCTTTTTCAGCAGAAAGCACAGGTTGCAAGAATGGTGTTCCAGTATTTGCAAGTCAGGTTTCTGAGGTTGACCAAAGCTATGCTGCCTTCAGTACTTGTTCAAGTGACGTGAATATAACAAAAGCTGGTTCTGATGTTGATTACACCGTAACGAATGATGAACTGAAATCAGGGTTGGATCTTCCTTCACATCTTGTGAACTGGAGTGCAACTTTGTTAGAGAGATTGAATTCATTACAAAAGTCTGGAGGTCATGAATGGACGTCAAAGTATATATTGGAAACTCACATTAGACTTTCAGATTTCAAGTCGCTGCTGCCCTATAAAACGTCTTTGCTTCCATTCTGGGAACACTCAAAAAGGAAGCTTAAGCAGATTGAAGATGACATTAACAAAGAAATTTATCAGACTGCTGTATCGTCACAATTGGATGAAGCCAAAGCAATTGATATTTCAAACATTGCAACAGAGCAGAAGTTTCAGGAAAGGTCGAATGTTGAGTCTGAAGCAGAGAGAGTGGAAAATGGCATTTCTGCTTTGGAGCATTCTCATTTGCCTGCTGATTCTGCCTTCTTCACACTCCAACGAGATAAAAGCCAAGTAACTGCCATTGCAAATGGAGAAAATATTTCCTCATCTATAGCAATTGATCACTTAGAAAACTCTACTGGTGTGGTTGAGCATGCAAGTGAAGCTGCAAATGATGAAATGGCTTTCAAGAATGGTGTACATTCTGTGGAAGATGTTGATATGGAGGTGGATATGGAAGTTGAAGATGCCAGTTCTGCAGGTAACTTGACAGTGGCTGGTGCATCAGATATGTCCGTTTCTAAGCCATTTACTTCCCTGGAGCAACCACTCCAGCCGGATCTACAAGTCCAACCAAATCTTTCTTCTGGATATGCATCCTTTGTTCCAGAGGACAGCTCTGTAGCACCACCACCACCACCACCAGATGAGGATTGGATTCCCCCACCACCACCTGATAATGAAGATGTTCCTCCACCTCCACCTGATGAGCCGGCTGAACCACTATATCCTCCTATGCCTGCATCTTATACCCAACTTGGGCAGCCTCTTTGTTACACCGAACCATATCAAGTGTCTTATCCTTATGGACATTCTGTCCCTGAAGTCGTCCCTGGTGCAAACTTTTATGGACATCCAGAAGCATGCAATGTTGTTTTGGCTCAAGCACCATTTTACTATGAGGCAGTTCCCAATTCACAGATTGAAGCTGTTCCAATAGTTATAAATGGTGTCATGCCTGAAGGTTATGGAATTCTTCAAGATGCAACAACCTCTCTTCCTATCTTTAGTTCTACAGAGACCTCTCAATTGCACGTTGATTCCTCATCTGTGAGATTTGATGCTTCTCCCTCTATTCAATATGGATCTTCTGACATAGCAAATATGAGTACTGCTTCTGCTGTCACTGAAACTGACAAAGGATGTGGAGAGACCACAACGGCCTCCTTCCGAGCATCTACTTCTGGCTCCCCAACTAATGATGTTCCACCAACAAGTAATGCTGTTACTGAATCTTCAGCTGCTGCTAATACGTCTATAGTTTCCAAGGTTCAACCAAAAGCTCTGCGCAGTAAAAAGCGGACAGTTTCAGTTGCTCCTTCCTTGAGATCGAATAAGAAGGTTTCAAGTTTGTTAGACAAGTGGAAGGCAGCAAAGGAAGAACTTGAAGATGAGGAAGAACCGGAAAATGCTTATGAGATTCTTGAGAGGAAACGAGAAAGGGAAATAAAGGAATGGCATGCCCAGCAGATTGCCAGTGGGGACGCAAAAGAAAATGCTAACTTTCAGCCTCTTGGTGGCGATTGGCGTGAGCGAGTAAAGCGACGGAGAGCTCAATCATCGAGTGAAGCTTCACAATCTCCTGCTGAAGCATCTACAGATGGAAACCAGCAGCCTGATCTGGCAGAAATGTCAAAAGATCTCCCCTCAGGGTGGCAGGCATATTGGGACGAATCGTCGAAGCAGGTGTATTATGGTAATGTTAACACCTCGGAAACGTCGTGGACGAAACCGAGCAAGTGA 2811 43.72 MGKRRERRLAALSNAGRRVKLDLFAEPSGDLDGSDVHEDVGGDIDSKQTTKLPKSASSSGHQAQNPLLLLEQYSDDEVDEDLNKNSDHDGQDDLLPDHNDEIASAPVEVCENMDANVGEDHTAQKAIQEEPEGGFVDFSGNSESRDEVKTDTNTLGSLSAETNLVQTSVPATSNVQDAGDVGSGWRVVMHEESHNYYYWNVETGETSWEVPDAVLAQAQSTQSTTDIKTSTQVPENVAVVKQESGLTNGGKLDAFSAESTGCKNGVPVFASQVSEVDQSYAAFSTCSSDVNITKAGSDVDYTVTNDELKSGLDLPSHLVNWSATLLERLNSLQKSGGHEWTSKYILETHIRLSDFKSLLPYKTSLLPFWEHSKRKLKQIEDDINKEIYQTAVSSQLDEAKAIDISNIATEQKFQERSNVESEAERVENGISALEHSHLPADSAFFTLQRDKSQVTAIANGENISSSIAIDHLENSTGVVEHASEAANDEMAFKNGVHSVEDVDMEVDMEVEDASSAGNLTVAGASDMSVSKPFTSLEQPLQPDLQVQPNLSSGYASFVPEDSSVAPPPPPPDEDWIPPPPPDNEDVPPPPPDEPAEPLYPPMPASYTQLGQPLCYTEPYQVSYPYGHSVPEVVPGANFYGHPEACNVVLAQAPFYYEAVPNSQIEAVPIVINGVMPEGYGILQDATTSLPIFSSTETSQLHVDSSSVRFDASPSIQYGSSDIANMSTASAVTETDKGCGETTTASFRASTSGSPTNDVPPTSNAVTESSAAANTSIVSKVQPKALRSKKRTVSVAPSLRSNKKVSSLLDKWKAAKEELEDEEEPENAYEILERKREREIKEWHAQQIASGDAKENANFQPLGGDWRERVKRRRAQSSSEASQSPAEASTDGNQQPDLAEMSKDLPSGWQAYWDESSKQVYYGNVNTSETSWTKPSK 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9212963 9221241 - MC11g1080 Mch11g1304 680238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1304 936 SUPERFAMILY WW domain 172 211 IPR036020 GO:0005515(InterPro)
Mch11g1304 936 Gene3D - 179 221 - -
Mch11g1304 936 MobiDBLite consensus disorder prediction 733 770 - -
Mch11g1304 936 MobiDBLite consensus disorder prediction 31 45 - -
Mch11g1304 936 CDD WW 183 212 IPR001202 GO:0005515(InterPro)
Mch11g1304 936 Gene3D - 897 936 - -
Mch11g1304 936 MobiDBLite consensus disorder prediction 544 603 - -
Mch11g1304 936 SMART ww_5 180 213 IPR001202 GO:0005515(InterPro)
Mch11g1304 936 SMART ww_5 903 936 IPR001202 GO:0005515(InterPro)
Mch11g1304 936 SUPERFAMILY WW domain 900 934 IPR036020 GO:0005515(InterPro)
Mch11g1304 936 ProSitePatterns WW/rsp5/WWP domain signature. 908 934 IPR001202 GO:0005515(InterPro)
Mch11g1304 936 MobiDBLite consensus disorder prediction 26 99 - -
Mch11g1304 936 Pfam WW domain 183 211 IPR001202 GO:0005515(InterPro)
Mch11g1304 936 Pfam WW domain 904 934 IPR001202 GO:0005515(InterPro)
Mch11g1304 936 ProSiteProfiles WW/rsp5/WWP domain profile. 179 213 IPR001202 GO:0005515(InterPro)
Mch11g1304 936 MobiDBLite consensus disorder prediction 876 896 - -
Mch11g1304 936 MobiDBLite consensus disorder prediction 544 558 - -
Mch11g1304 936 MobiDBLite consensus disorder prediction 845 905 - -
Mch11g1304 936 MobiDBLite consensus disorder prediction 79 99 - -
Mch11g1304 936 Coils Coil 801 821 - -
Mch11g1304 936 MobiDBLite consensus disorder prediction 562 601 - -
Mch11g1304 936 CDD WW 905 934 IPR001202 GO:0005515(InterPro)
Mch11g1304 936 ProSitePatterns WW/rsp5/WWP domain signature. 185 211 IPR001202 GO:0005515(InterPro)
Mch11g1304 936 ProSiteProfiles WW/rsp5/WWP domain profile. 902 936 IPR001202 GO:0005515(InterPro)
Mch11g1304 936 PANTHER OS06G0298400 PROTEIN 1 936 - -
Mch11g1304 936 MobiDBLite consensus disorder prediction 48 69 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1304 K24774 - - csv:101219916 1304.66
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g719 . . Bda07g00423 Bda09g00442 . . . . . . Cma01g01060 Cma09g01029 Car01g00934 Car09g00932 Sed04g3626 Cpe06g00836 Cpe02g00836 Bhi09g01804 Tan01g3218 Cmetu01g2692 . . Mch11g1304 . . . . . . . . . . . . Lsi02g01808 . . . . . . . Bpe11g00598 . . Bma14g00671 . Cmo01g01101 Cmo09g01031 . . . . . . . . . . . . . Cla09g02097 Cam09g2183 Cec09g2250 . . . . . . Chy01g01120 Cme01g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004218 2 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 4 1 42