Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1310 ATGTTCTCAAGAAGAACAATGACTGCAACTCTAAGGAATCTCTTTCTTCCTCCTCATTTCTTCTCCTTAGGCTTGATTTTTTCTGTGACATCTCTTCTCTTTTCTTCTTGTTACTCCATTGATGAACAGGGTAGAGCTCTTCTTACATGGAAGGACAGTCTAACCAGCTCCACCGATGCTTTGCGGTCGTGGAAGCCCGAGGAAGAAACACCATGTTTATGGTTCGGAATTATCTGCGATTCGAAGGGGGAGGTGGTGGAGATAAAGTTAATAGTAGTGGATTTGCAAGGTACTTTGCCTTCAAATTTTCAGTCTCTCAAGCTTTTGAGGAGCCTTTCCATCTCTTCGACCAATATTTCCGGGACGATTCCGAAAGAGTTTGGAGATTATAATGAGCTCAGCTTCATTGATCTCAGCGACAATCACCTTTCGGGCGAAATGCCAGAAGAGATTTGCAAGCTGAGCAAGCTGCAGGAGTTGTATCTTAATGGCAATGCTTTTGAAGGGATTATACCTTTGGAGATTGGAAATCTTTCAAACCTTGTGTCTCTCACACTCTTTGACAATAACCTCAGTGGGGAGATTCCAAAAAGCATTGGAAGGTTGGAAAAGCTTCAAATTTTCAGAGCTGGAGGGAACAAAAATCTCAAGGGTGAATTGCCAATGGAGATTGGAAACTGCAGCAGTTTAGTCATGTTAGGCATAGCCGAAACCAAAATCTCCGGGAGGCTTCCGTCGACGATTGGGATGCTGAAAAGAATCCAAACCATAGCCATTTATTCATCCCGGCTCTCCGGTCCAATCCCAGAAGAGATTGGAAACTGTAGTGAGTTGCAGAGTCTTTACCTGTATCAGAATACTCTTTCTGGGCTGATACCGAGACAACTCGGGGAGCTGAGAAATCTTCAAAGTGTCCTTCTATGGCAGAACAACTTGGAGGGTGAAATTCCGGATGAACTTGAGAACTGCAAGGAGCTCCTAGTCCTTGACTTTTCAGAAAATCTTCTAACTGGAAGCATACCAAAAAGTCTTGGAGGACTTTCAAATCTTCAAGAGCTTCAACTGAGTATTAATCAGCTCTCTGGTACAATACCTTCTGAAATCTCTAATTGTTTGGCTTTGTCTCACCTGGAGATCGACAACAACATGATTTCAGGCGAGATACCCACTGCCATTGGCAACCTAAAGAACTTGACTATATTTTTTGCCTGGCAAAACAATCTAACAGGAAGTATTCCCAACACTCTCTCAGACTGCCAGAATCTCCAGGCTCTCGATCTCTCTTTTAACAACTTGGTCGGTCCAATACCGAAACAGATTTTCGGGTTGAAGAATCTCACCAAGATTCTTCTTATTTCGAATAATCTGTCCGGGTTTATTCCACCTGATATAGGAAACTGTACGAATCTGTACAGGTTAAGACTGAATGAGAACAGGATCGGAGGTACTATTCCATCAGAGATTGGCCATCTGAAGAACTTGAATTTCTTTGACATGGGTGAAAACCTTCTTGTTGGAAGAATTCCTCCATCGTTATCAGAATGTGAAAATCTCGAGCTTCTCGACCTCCATTCCAATGGGCTCACTGGTCCTTTGCCAGATGATCTGCCAAAGAGCCTACAGATTTTGGACATCTCCAACAACAGGTTTAATGGCCAGGTCCATCTCAGAATTGGAGGATTGATTGAACTAACAAAACTCAACCTTGGAAAAAACCAACTTTCTGGGAAAATCCCGGGAGAAATCGTTTCCTGCAAGAAGCTCCAGTTATTAGACCTTGGCAACAATGGCTTCTCTGGGGAGCTCCCAAAGGAATTGGGTCAAATTTCTTCCCTCGAAATAGCTCTTAATCTAAGTTGCAATCAATTTTCAGGTGAAATCCCATCAGAATTCTCTGGTCTCACCAAGCTAGGAATTCTAGACCTCTCCCACAACAGCCTCTCTGGGAACCTCAGCCTTCTTGTAGGACTTCAAAACCTCGTCTCTCTAAACGTCTCCTACAACGACTTCGTCGGTGAATTGCCCGACAAACCTTTCTTTCAGAAGCTCCCTCTCAGCAACATTGCCGGAAACAAAGGCCTTTACATATCAGGTGGGCTTCCTGCAGACAATGTGGTATCCAACAGCAGAAGCAGAGGAGCCATGAAGGTGGCGATGCCAATCCTGATCAGCACCAGTGCAGTGCTGATCCTTCTAGCAATTTACATGCTAATCCGCACCCATATCGCCAATTCCAGACTTCTCTCAGAAGGGGAAAACTGGGAAATAACTTTGTACCAAAAGCTCGAGTTTCCAATCGACGACATCATCCGAAACTTAACTTCATCCAATGTCATTGGTACCGGAAGCTCCGGCGTTGTGTACAGAGTCACAACCCCAAGTGGGGGAACAATGGCAGTGAAGAAAATGTGGTCGAATGAAGATTCAGGAGCCTTCAGTTCAGAAATCCAAACTCTGGGTTCAATTCGACACAAGAACATAATCAGGCTTCTGGGTTGGGGATCCAACAGGAATTTGAAGCTCCTGTTCTATGATTATCTCCCAAATGGAAGCTTGAGCTCCCTTCTCCATGGCGCAGGAAAGGGAGGAGCAGAATGGGAGGTCAGATACAAAATTCTCTTAGGGGTGGCTCATGCTCTCGCATATCTCCACCACGACTGTCTTCCTCCAATCTTACATGGCGATGTGAAGGCCATGAATGTGCTGCTCGGTCATGGCTTGCAACCTTACCTCGCCGACTTTGGGCTGGCCAGAATCGTGAGTATAAACAGCGATGAAGACGGTTCAGGGAAGCCATTGCAGAGACCACCTCATCTTGCTGGTTCTTACGGCTACATGGCCCCGGAGCTTGGGTCGACGCAGAGAATCACAGAGAAGAGCGATGTGTACAGCTTCGGAGTGGTGATAATGGAGGTTCTAACGGGGCGGCACCCGCTGGACCCGACGATACCCGGAGGAGTGAGTTTGGTGCAATGGGTCCGCGATTATTTGGCCGGAAAGCGAGACCCAGTCGCCATTTTCGATTCCAAGCTCAGAGGAAGAGCCGATCCTGCCATGCACGAGATGCTGCAAACCCTAGCCATCGCGTCGCTCTGTGTCAGCGTCAGGGTCAACGATCGGCCCACGATGAAAGATGTCGTCGCAATGCTCAAGGAGATTCGACATGTCGAATTTGGTAGGGCCACCGTCGACGGCGCCAAGCCGGGAACGGCGGTGGTGCCGTCGTCGCCTCCGCCGCGGTCGCTGTCGAGGAAGTTTGTGTCCCAAGGATCTTCCCAGTGCTCCTTTGTGTTCTCTGATGATTCAATCTAA 3312 46.8 MFSRRTMTATLRNLFLPPHFFSLGLIFSVTSLLFSSCYSIDEQGRALLTWKDSLTSSTDALRSWKPEEETPCLWFGIICDSKGEVVEIKLIVVDLQGTLPSNFQSLKLLRSLSISSTNISGTIPKEFGDYNELSFIDLSDNHLSGEMPEEICKLSKLQELYLNGNAFEGIIPLEIGNLSNLVSLTLFDNNLSGEIPKSIGRLEKLQIFRAGGNKNLKGELPMEIGNCSSLVMLGIAETKISGRLPSTIGMLKRIQTIAIYSSRLSGPIPEEIGNCSELQSLYLYQNTLSGLIPRQLGELRNLQSVLLWQNNLEGEIPDELENCKELLVLDFSENLLTGSIPKSLGGLSNLQELQLSINQLSGTIPSEISNCLALSHLEIDNNMISGEIPTAIGNLKNLTIFFAWQNNLTGSIPNTLSDCQNLQALDLSFNNLVGPIPKQIFGLKNLTKILLISNNLSGFIPPDIGNCTNLYRLRLNENRIGGTIPSEIGHLKNLNFFDMGENLLVGRIPPSLSECENLELLDLHSNGLTGPLPDDLPKSLQILDISNNRFNGQVHLRIGGLIELTKLNLGKNQLSGKIPGEIVSCKKLQLLDLGNNGFSGELPKELGQISSLEIALNLSCNQFSGEIPSEFSGLTKLGILDLSHNSLSGNLSLLVGLQNLVSLNVSYNDFVGELPDKPFFQKLPLSNIAGNKGLYISGGLPADNVVSNSRSRGAMKVAMPILISTSAVLILLAIYMLIRTHIANSRLLSEGENWEITLYQKLEFPIDDIIRNLTSSNVIGTGSSGVVYRVTTPSGGTMAVKKMWSNEDSGAFSSEIQTLGSIRHKNIIRLLGWGSNRNLKLLFYDYLPNGSLSSLLHGAGKGGAEWEVRYKILLGVAHALAYLHHDCLPPILHGDVKAMNVLLGHGLQPYLADFGLARIVSINSDEDGSGKPLQRPPHLAGSYGYMAPELGSTQRITEKSDVYSFGVVIMEVLTGRHPLDPTIPGGVSLVQWVRDYLAGKRDPVAIFDSKLRGRADPAMHEMLQTLAIASLCVSVRVNDRPTMKDVVAMLKEIRHVEFGRATVDGAKPGTAVVPSSPPPRSLSRKFVSQGSSQCSFVFSDDSI 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9263070 9267282 + MC11g1085 Mch11g1310 680244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1310 1103 ProSitePatterns Protein kinases ATP-binding region signature. 779 802 IPR017441 GO:0005524(InterPro)
Mch11g1310 1103 Gene3D Ribonuclease Inhibitor 615 698 IPR032675 -
Mch11g1310 1103 Gene3D Ribonuclease Inhibitor 437 536 IPR032675 -
Mch11g1310 1103 Gene3D Ribonuclease Inhibitor 338 436 IPR032675 -
Mch11g1310 1103 Pfam Leucine rich repeat 300 360 IPR001611 GO:0005515(InterPro)
Mch11g1310 1103 Pfam Leucine rich repeat 539 597 IPR001611 GO:0005515(InterPro)
Mch11g1310 1103 SMART LRR_typ_2 347 371 IPR003591 -
Mch11g1310 1103 SMART LRR_typ_2 178 202 IPR003591 -
Mch11g1310 1103 SMART LRR_typ_2 154 177 IPR003591 -
Mch11g1310 1103 SMART LRR_typ_2 561 585 IPR003591 -
Mch11g1310 1103 SMART LRR_typ_2 299 323 IPR003591 -
Mch11g1310 1103 SMART LRR_typ_2 491 515 IPR003591 -
Mch11g1310 1103 SMART LRR_typ_2 443 467 IPR003591 -
Mch11g1310 1103 Pfam Leucine Rich Repeat 156 178 IPR001611 GO:0005515(InterPro)
Mch11g1310 1103 Pfam Leucine Rich Repeat 445 467 IPR001611 GO:0005515(InterPro)
Mch11g1310 1103 Pfam Leucine Rich Repeat 616 634 IPR001611 GO:0005515(InterPro)
Mch11g1310 1103 Pfam Leucine Rich Repeat 180 202 IPR001611 GO:0005515(InterPro)
Mch11g1310 1103 Pfam Leucine Rich Repeat 109 128 IPR001611 GO:0005515(InterPro)
Mch11g1310 1103 Pfam Leucine Rich Repeat 469 491 IPR001611 GO:0005515(InterPro)
Mch11g1310 1103 Pfam Leucine Rich Repeat 133 154 IPR001611 GO:0005515(InterPro)
Mch11g1310 1103 Pfam Leucine Rich Repeat 421 443 IPR001611 GO:0005515(InterPro)
Mch11g1310 1103 Pfam Leucine Rich Repeat 374 395 IPR001611 GO:0005515(InterPro)
Mch11g1310 1103 Pfam Leucine Rich Repeat 517 537 IPR001611 GO:0005515(InterPro)
Mch11g1310 1103 ProSiteProfiles Protein kinase domain profile. 773 1058 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g1310 1103 Gene3D Ribonuclease Inhibitor 40 198 IPR032675 -
Mch11g1310 1103 Gene3D Ribonuclease Inhibitor 537 614 IPR032675 -
Mch11g1310 1103 SUPERFAMILY RNI-like 320 669 - -
Mch11g1310 1103 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Mch11g1310 1103 FunFam Predicted protein 198 294 - -
Mch11g1310 1103 Gene3D Phosphorylase Kinase; domain 1 740 846 - -
Mch11g1310 1103 Gene3D Transferase(Phosphotransferase) domain 1 847 1063 - -
Mch11g1310 1103 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 847 1067 - -
Mch11g1310 1103 SMART serkin_6 773 1023 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g1310 1103 FunFam Leucine-rich receptor-like protein kinase family protein 342 614 - -
Mch11g1310 1103 PANTHER LEUCINE RICH REPEAT KINASE 2 371 1053 IPR051420 -
Mch11g1310 1103 SUPERFAMILY Protein kinase-like (PK-like) 764 1050 IPR011009 -
Mch11g1310 1103 ProSitePatterns Serine/Threonine protein kinases active-site signature. 891 903 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g1310 1103 Gene3D Ribonuclease Inhibitor 199 337 IPR032675 -
Mch11g1310 1103 SUPERFAMILY RNI-like 93 409 - -
Mch11g1310 1103 FunFam Leucine-rich receptor-like protein kinase family protein 40 197 - -
Mch11g1310 1103 FunFam Putative LRR receptor-like serine/threonine-protein kinase 615 699 - -
Mch11g1310 1103 Pfam Protein kinase domain 776 981 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g1310 1103 FunFam Putative LRR receptor-like serine/threonine-protein kinase 758 846 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1310 Mch-Chr11:9263070 Mch7g0882 Mch-Chr7:13388969 3.94E-101 dispersed
Mch11g1310 Mch-Chr11:9263070 Mch6g0134 Mch-Chr6:803128 5.58E-124 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77081 PF00069 Pkinase 6.20E-37 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1310 - - - 0.0