Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1312 ATGCCGCAGGAATTAAGCTACGGAAGTTCGATTTTGTCGTCTCCGAACAAGAATCTGAGAGGATTGAAGGCTCTGGTTCCGAGTAATGATGCTTCTTCAGCGATTCCTGAGGAGGTTATCAACGACGATGAGTTGGCTCAGCGGAAAGCCGAAGAAGCCGCTTCCAGGAGGAGCCAAGCAGCAGAATGGCTACGCCAAATGGATCATGGAGCATCAGGAGTGCTGTCAAATGAGCCCTCTGAAGAAGAGTTCTGTCTCGCACTCCGCAATGGCCTCATTCTCTGCAATGTCCTCAACAAAGTCAATCCTGGTGCTGTTCTCAAGGTGGTGGAGAATCCAGTTGTAACAGTTCAGTCAGCGGAAGGAGCTGCACAATCTGCAATCCAGTATTTTGAGAACACGAGGAACTTCTTGGAGGCAGTTAAAGACATGAAGCTCTTGACATTTGAAGCTTCTGACTTGGAAAAGGGAGGTACTTCGGGTAAAGTTGTAGAGTGTATTCTATGCTTGAAAGGATATTATGAGTGGAAGCAAGCCGGTGGGATTGGGGTTTGGAGATATGGAGGAACTGTACGTATCACATCTTTCACCAGAAGTTCACCATCCATAACTGGAAGTGAGAGTACAGATGAGTCGGTGCACGAATCAGATTCATCTCAGTTCGAGCAGCTACTAGACTTCCTTCATCTGTCTAATGAAGTTTCAGTTGAAGAATCCAGAACTTGTAGTGCTCTTGCTTTTCTTTTTGATCGTTTTGGACTCAAACTTCTACAAGCTTACCTCAGAGAGAGCAACGGGATCGAAGATTTGCCTTTAAATGCAATGGTCATTGATGCATTACTTAACAAGGTTGTCAAGGATTTCTCTGCACTGCTTGTGTCTCAAGGCACTCAGCTCGGATTCTTTCTGAAGAAGATATTGAAAAGCGACTTAAGTTCACTATCAAAATCTGAATTCATTGAAGCAATTTCTCGATACATCAATCAAAGAACTAATATGGCTTCAAGTGACTTCTCCAAGTTCTGTGTTTGTGGAGGAAAACGTGAGGTTATTCTTAGGGCTCCTGCTGGCCATGAAGAACTGGTTCATGCTCAGCAGAAACAGATTCAGGAGCTAAAGTCAGCATTTCAAGACACCAAACTTGAAGTTAAACACATACAATCTCAATGGGAAGAAGAAGTTGAAAGGCTAGAACACCATCTTAAGGGCCTTGAAATGGCTTCCTCTTCTTATCACAAAGTCTTGGAAGAAAATCGTATACTTTACAATCAAGTTCAAGACCTTAAAGGAACAATAAGGGTCTACTGTAGAGTGAGACCTTTCTTACCTGGACAGTCAAACCAGCAGTCTACAGTAGACTATATTGGAGAAAATGGGAACATTATGATTGCAAATTCTCTAAAGCAAGGCAAAGAAGCAAGAAGAGTATTTTCCTTCAATAAAGTCTATGGAACTAATGTTACCCAAGAACAAATATATGTCGATACTCAACCGCTGATCAGATCTGTTCTTGATGGTTTTAATGTATGCATCTTTGCATATGGACAAACTGGCTCAGGAAAGACATATACAATGAGTGGCCCAGATTTGATGACTGAGGACACGTGGGGTGTTAATTATCGAGCTCTAAACGACTTATTCCAAATATCAAATGCAAGGTTGGATATGATCAAGTATGAAGTTGGAGTTCAAATGATTGAAATATACAATGAGCAAGTGAGAGACTTGTTAGTCAGTGATGGCTCAAACAGAAGATATCCTTTTAAAGAACAAAATATACGAAATAACTCTCAACTGAGTGGCCTTAATGTACCTGATGCAAGTTGGGTTCCGGTGACATGTACTCAAGATGTTCTTAGTTTGATGAGGATCGGCCAAAAAAACCGAGCAATCGGCGCGACGGCTTTAAATGAGAGAAGTAGTCGTTCACACAGTGTTTTAACAGTTCATGTCCTTGGAAGAGATTTGGTCACCGGATCCATTCTCAGGGGGTGTCTTCATCTAGTAGATTTAGCTGGGAGTGAAAGAGTGGACAAATCTGAAGCTGTAGGTGACAGACTAAAGGAAGCACAACATATAAACAGATCGCTCTCTGCACTTGGAGATGTAATTTCTGCTCTTGCACAAAAGAGTGCACATATCCCTTACCGAAATAGCAAGCTCACTCAACTCCTACAAGACTCTTTAGGTGGACAGGCTAAGACATTCATGTTTGTACATATAAATCCCGAAGTTGATTCCCTTGGAGAGACAATTAGCACGCTTAAGTTTGCTGAGAGAGTTGCCTCCATTGAATTAGGTGCGGCTCGTTGTAATAAAGAAAATGGTCAAATTCGAGAACTTAAAGATGAGATATCAAATCTTAAATCGGCATTGGAGAGGAAGGATGCAGAACTTGAACAATTAAAGAGTGGCAACGCTCGGGCCTTTGTAGAAAATCAGAAACCAAGAACAGTCTCGCCCTTCCGTGTTCTAAGACATCATGGTACTAATGGAGGTACTAAGCCTGAAAGTTGTCAACGGCCTTTGGATGATGCTAAAACTTTGGAGGCTAGAAGCTACTCTTCAGGAAAGCAAAGAAGGCCAAGATTTCCCTCTTCATTCACAGAGAAAGATGTAATAAAAATGCCATTCTTAGCCGAAGAGAGATCAACAACAAGTACAAGCTCTGGGAATGCAAGGTCTCCATCTCCACCAGTTAGGAGATCAATATCAACAGATAGAGGCGCCCTTATGAGAAGCAAGGTTAAATCAGAGACGAACGAGAACCAACCGATAGCAAAGCCTTCGTTTCCGGTTAGAGTGCCTGTTAACAAGTCCATGGCTGCAGGACGAGTAAACATCAGTTCCCAAGAGCACGAAAACTTCTCTGATGCATTGATTAGTCTCCACAAATCAATGGCCTCAACAAAGAAGAAACAACTAGTTTGCCAAGAAAACAATGAAGATGAACAGCAGCTGAAGCAGTCTCTCATTACAATTCAAGGTGGTGGGCCCAGGAGAGGCAGAAATGAAGGCAAAACCAAAGCTAAGCAACAGCAGTTACCCAGTGCAGCAGCCAGGATCAATAACCAGAAGCAGCAAGAACATGCAGTAACAACATTCCTTACTGATATTTATGCTGGTGGGAAAATGGAGGATGCAAGAAAGAGCGATTTCTCTGAGATGGAGAATGAGCATTTTCTTGTGGGATTGCCTCTTGATGGTGCTTTGAAGGTTAAAAAAGCTTGTCCGAAGTTCCCCAGAAACTCCCAGAATCTGGAGCCACCGAGAGTGCCAGTTTCTACTGTTGAGAATGGGAATCGGTTTCAGAGTGAAGTAAGCAGTGGATCAGTGGCTGAATTTAGAAGGAGCAAATCTACACCTCGCGGGAAATTTTTGGTACTACCATGA 3393 42.62 MPQELSYGSSILSSPNKNLRGLKALVPSNDASSAIPEEVINDDELAQRKAEEAASRRSQAAEWLRQMDHGASGVLSNEPSEEEFCLALRNGLILCNVLNKVNPGAVLKVVENPVVTVQSAEGAAQSAIQYFENTRNFLEAVKDMKLLTFEASDLEKGGTSGKVVECILCLKGYYEWKQAGGIGVWRYGGTVRITSFTRSSPSITGSESTDESVHESDSSQFEQLLDFLHLSNEVSVEESRTCSALAFLFDRFGLKLLQAYLRESNGIEDLPLNAMVIDALLNKVVKDFSALLVSQGTQLGFFLKKILKSDLSSLSKSEFIEAISRYINQRTNMASSDFSKFCVCGGKREVILRAPAGHEELVHAQQKQIQELKSAFQDTKLEVKHIQSQWEEEVERLEHHLKGLEMASSSYHKVLEENRILYNQVQDLKGTIRVYCRVRPFLPGQSNQQSTVDYIGENGNIMIANSLKQGKEARRVFSFNKVYGTNVTQEQIYVDTQPLIRSVLDGFNVCIFAYGQTGSGKTYTMSGPDLMTEDTWGVNYRALNDLFQISNARLDMIKYEVGVQMIEIYNEQVRDLLVSDGSNRRYPFKEQNIRNNSQLSGLNVPDASWVPVTCTQDVLSLMRIGQKNRAIGATALNERSSRSHSVLTVHVLGRDLVTGSILRGCLHLVDLAGSERVDKSEAVGDRLKEAQHINRSLSALGDVISALAQKSAHIPYRNSKLTQLLQDSLGGQAKTFMFVHINPEVDSLGETISTLKFAERVASIELGAARCNKENGQIRELKDEISNLKSALERKDAELEQLKSGNARAFVENQKPRTVSPFRVLRHHGTNGGTKPESCQRPLDDAKTLEARSYSSGKQRRPRFPSSFTEKDVIKMPFLAEERSTTSTSSGNARSPSPPVRRSISTDRGALMRSKVKSETNENQPIAKPSFPVRVPVNKSMAAGRVNISSQEHENFSDALISLHKSMASTKKKQLVCQENNEDEQQLKQSLITIQGGGPRRGRNEGKTKAKQQQLPSAAARINNQKQQEHAVTTFLTDIYAGGKMEDARKSDFSEMENEHFLVGLPLDGALKVKKACPKFPRNSQNLEPPRVPVSTVENGNRFQSEVSSGSVAEFRRSKSTPRGKFLVLP 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9279874 9288647 - MC11g1087 Mch11g1312 680246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1312 1130 FunFam kinesin-like protein KIN-14F 426 805 - -
Mch11g1312 1130 PRINTS Kinesin heavy chain signature 665 683 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Mch11g1312 1130 PRINTS Kinesin heavy chain signature 714 735 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Mch11g1312 1130 PRINTS Kinesin heavy chain signature 506 527 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Mch11g1312 1130 PRINTS Kinesin heavy chain signature 634 651 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Mch11g1312 1130 ProSiteProfiles Kinesin motor domain profile. 431 764 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Mch11g1312 1130 MobiDBLite consensus disorder prediction 995 1027 - -
Mch11g1312 1130 SMART ch_5 56 173 IPR001715 GO:0005515(InterPro)
Mch11g1312 1130 CDD CH_AtKIN14-like 56 171 - -
Mch11g1312 1130 MobiDBLite consensus disorder prediction 881 902 - -
Mch11g1312 1130 MobiDBLite consensus disorder prediction 1009 1027 - -
Mch11g1312 1130 Coils Coil 362 407 - -
Mch11g1312 1130 FunFam kinesin-like protein KIN-14F 46 175 - -
Mch11g1312 1130 ProSiteProfiles Calponin homology (CH) domain profile. 54 175 IPR001715 GO:0005515(InterPro)
Mch11g1312 1130 SUPERFAMILY Calponin-homology domain, CH-domain 51 196 IPR036872 -
Mch11g1312 1130 Pfam Calponin homology (CH) domain 57 175 IPR001715 GO:0005515(InterPro)
Mch11g1312 1130 SMART kinesin_4 429 772 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Mch11g1312 1130 Pfam Kinesin motor domain 437 764 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Mch11g1312 1130 MobiDBLite consensus disorder prediction 1103 1130 - -
Mch11g1312 1130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 432 800 IPR027417 -
Mch11g1312 1130 Coils Coil 771 805 - -
Mch11g1312 1130 Gene3D - 40 188 IPR036872 -
Mch11g1312 1130 PANTHER KINESIN-LIKE PROTEIN KLP-3 37 1026 IPR027640 GO:0003777(InterPro)|GO:0007017(PANTHER)|GO:0007018(InterPro)|GO:0008017(PANTHER)|GO:0015630(PANTHER)
Mch11g1312 1130 MobiDBLite consensus disorder prediction 851 909 - -
Mch11g1312 1130 Gene3D Kinesin motor domain 373 766 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1312 K27887 - - csv:101221138 1851.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1312 Mch-Chr11:9279874 Mch8g2162 Mch-Chr8:24732754 1.69E-230 dispersed
Mch11g1312 Mch-Chr11:9279874 Mch10g1002 Mch-Chr10:7153818 3.40E-90 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g727 Blo03g00494 . . . . . . . . . Cma01g01058 Cma09g01033 Car01g00932 Car09g00939 . Cpe06g00841 Cpe02g00838 Bhi09g01820 . . . . Mch11g1312 . . . . . . . . Cone6ag0001 Cone9ag0003 . . Lsi02g01801 Csa07g01062 . . . . . . Bpe11g00603 . . Bma14g00667 . Cmo01g01099 Cmo09g01035 . . . . . . . . . . . . . Cla09g02100 Cam09g2186 Cec09g2255 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007328 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 1 1 1 1 36