Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1340 ATGGTTTTGCAGAGCATTCCACACAGCATTCTAATGGAGATCCTGTTGAATCTGGACCTCGAATCTCTCTGCTCAGTCGCATGCGTCAGTAAAACCCTACAATCCGCCGCCGTCGAGGCCCTCCCTCTCCTCTCCACTCTCCATCTCCCAATCGTAAATTTTGAAACGCAGGCATTCTCTCCCGATCCCCGGACTGTGAAGAGTGGCGTAATTGGTCGGTGCCGAGGCATGGGAATGAGAAGTCTGACTGTCAATTGCCTCCGCCTTGATGATTCTTCACTCGTTGGTTTTCTTGGCCCTAATCTCCTCGAGCTCAACTTGGTTTGCTGCTCTTTACTCTCTTATAAGTTCCTTGCTGCTGTGGGCCAACTTTGCCCCAATCTGAGGGTGCTTGTACTTCAATTCGCAGCTCAAGATTCTCCCGAAGTATTCAATAGAAACCTGGCTGAAATGCTCACAAGATGCTTGTTCTTGGATTCTATCTCCCTGAAGATTCGTGGAGCCGCAGATATTGCGGCTAATTCTTTTAGTGCTGTGGAAGCATGTCTCCCCAAAACCACCAAAACTCTGAAGTTGAAATCACTGCTTCATCAAGATGCAATTTGCATCATGAACAAACTAAGAGATTCTGAGAACTCTTTAATCACCACCTATTCCAAAAACCTTGCACCTCCTCCATTATCTCCAGGAGTAATGTTGCAATGCTTGTCACTTACCTTGGATGTTATTTCTGATGAGTTAGTTATAACCATTGTCGACTCTCTTCCTTTTTTGGTTGAGCTTCACCTAGAAGACATGCCGAACAGGGAACTACTCGTGCACCGTGATTTGACCAATAGAGGACTTCATTCATTGAGTACTTGTCGTAATCTGGTATCGCTTTCTATTATTCGCAGTAGGCAGAACCACCAAGTTTCTTTCAGAAAGTTGAATGACATGGGCATGTTTCTCCTGTCTGAGGGTTGCAAAGGTCTTGAATCAGTGAGACTCTGTGGATTCTCTAAAGTGAGTGATGCAGGATTTGCGTCGATCTTACACTCATGCCATAAGTTGCAAAAATTTGAAGTTCGTAATGCATTGCATTTGTCGGACCTGGCATTCGACGGTTTTGATGGTATCGGATGCCCCATTACAGAGCTGAGATTGTTATCATGTAGTCTCATAACCTGTGAATCCGTGAAGCAGTTGGCCTGCTCTACGCGCTTGGAAGTCCTAGATCTATGTGGCTGCAAGAGCATATCAGATTCCTGCCTTGATCCCATTTCCAGTTTGCACCATTTATCATCATTGAACCTAACTGCAACCGATATAACCGACTACGGCTTATCCATTCTTGGCCAGGGGAGTTCACCCATTGCACGGTTGTCTCTTCGAAGCTGTAAAAGAGTAACCGACGAAGGAATCTACCGACTATTTCATGGTGCCGGGACAGTTAGCAAAACGTTGTCTGCATTGGATCTTGGACAAATTTCAGGGATAACCGATAGAGCAATTCGAACGATTGCATCCATCGGTGTCGGGATAACTGAGTTATGCATCAGATCTTGCTTCCATGTGACCAATTCTTCGGTGGAAGCTTTGGCTATGAAGAAACAAGTCCAAGGTGAAGGTAAGTTACTTCGTAGGCTTGATCTTTTTAATTGCATTGGTCTATCAAGTGGTGCATGTGGATCATTTAGAGGGTCTCTATTTCCTGGTTTACAGTGGCTTGGGATTGGCCACACTCGTTTTAGTAGTGTTGGAGATGCTAATTTTATTGAGTTTTGTTCCAAACGACCTTGGTTGACATTATGTTTGGAAGGTTGTGAAGTTGGGTGTCATGATGGATGGCAATTTCATAGATCATGA 1848 44.75 MVLQSIPHSILMEILLNLDLESLCSVACVSKTLQSAAVEALPLLSTLHLPIVNFETQAFSPDPRTVKSGVIGRCRGMGMRSLTVNCLRLDDSSLVGFLGPNLLELNLVCCSLLSYKFLAAVGQLCPNLRVLVLQFAAQDSPEVFNRNLAEMLTRCLFLDSISLKIRGAADIAANSFSAVEACLPKTTKTLKLKSLLHQDAICIMNKLRDSENSLITTYSKNLAPPPLSPGVMLQCLSLTLDVISDELVITIVDSLPFLVELHLEDMPNRELLVHRDLTNRGLHSLSTCRNLVSLSIIRSRQNHQVSFRKLNDMGMFLLSEGCKGLESVRLCGFSKVSDAGFASILHSCHKLQKFEVRNALHLSDLAFDGFDGIGCPITELRLLSCSLITCESVKQLACSTRLEVLDLCGCKSISDSCLDPISSLHHLSSLNLTATDITDYGLSILGQGSSPIARLSLRSCKRVTDEGIYRLFHGAGTVSKTLSALDLGQISGITDRAIRTIASIGVGITELCIRSCFHVTNSSVEALAMKKQVQGEGKLLRRLDLFNCIGLSSGACGSFRGSLFPGLQWLGIGHTRFSSVGDANFIEFCSKRPWLTLCLEGCEVGCHDGWQFHRS 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9513156 9516955 - MC11g1110 Mch11g1340 680274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1340 615 SUPERFAMILY RNI-like 277 581 - -
Mch11g1340 615 Pfam F-box domain 4 36 IPR001810 GO:0005515(InterPro)
Mch11g1340 615 ProSiteProfiles F-box domain profile. 1 47 IPR001810 GO:0005515(InterPro)
Mch11g1340 615 SUPERFAMILY RNI-like 48 358 - -
Mch11g1340 615 CDD F-box_SF 5 37 - -
Mch11g1340 615 Gene3D Ribonuclease Inhibitor 71 462 IPR032675 -
Mch11g1340 615 Gene3D Ribonuclease Inhibitor 479 611 IPR032675 -
Mch11g1340 615 PANTHER UNCHARACTERIZED 187 471 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Mch11g1340 615 SMART LRR_CC_2 99 124 IPR006553 -
Mch11g1340 615 SMART LRR_CC_2 424 448 IPR006553 -
Mch11g1340 615 SMART LRR_CC_2 375 399 IPR006553 -
Mch11g1340 615 SMART LRR_CC_2 505 530 IPR006553 -
Mch11g1340 615 SMART LRR_CC_2 449 474 IPR006553 -
Mch11g1340 615 SMART LRR_CC_2 479 504 IPR006553 -
Mch11g1340 615 SMART LRR_CC_2 322 347 IPR006553 -
Mch11g1340 615 SUPERFAMILY F-box domain 4 38 IPR036047 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1340 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1340 Mch-Chr11:9513156 Mch4g0456 Mch-Chr4:2897214 2.35E-73 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g797 . . . . . . . . . . . Cma09g01048 . Car09g00956 Sed01g2636 Cpe06g00856 . Bhi09g01852 Tan01g3265 Cmetu01g2709 . . Mch11g1340 . . . . . . . . . . . . Lsi02g01779 Csa07g01034 . . . . . . . . . . . . Cmo09g01054 . . . . . . . . . . . . . Cla09g02121 Cam09g2208 Cec09g2281 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013838 0 2 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 24