Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1350 TCTTTTTTATGGAAGATGCAAACATTCTCCCACATCGTGCTGCTGATCATGGCCGCCGTGGCGAGCCATGATGCTGAAGCGTCGGAAGCTCTTCCTCGACAGTTGCCGATCACCTTCCCCAATTGCACGGACCGGTGCGGCGAAGTGGAGATTCCGTACCCATTTGGACTCACTCCTGAATGTTCTTTCAGTGAGGCGTTTCTCATCACCTGCAACAGCTCGCTTAACCCGAGCAAGCCGTTCATTGGCGACGTTCCGGTCGTGAGTATTTCGATCGAAGATGGCGAGTTGGTCATCGAGACTCTTGTGGCCAGTTATTGTTTTGATGCTAATGGGAATACCTTTGGCAGCCACAAAGAAGCTTTTCTCAACGTCGACCAGTTTACCATCTCGACGAGGAACATCTTTACAGTTGTCGGCTGCAGCACGGTCTCGATGATCGGTGGTGCCCTCCGGGACGGCGAAAGTTACATTGCGGGATGTGCATCGTTCTGCAGTGGTTATCGAAGTATAGTGAATGGGTCATGCTCTGGCGTCGGGTGCTGTCAAATGATGATCCCTGGCGGATTGAAAGAGGCAAGAAATATAACATTGGAGGAAGGAAACGACATATCAAATGGGTCGGATATATATTCATGTGGGTACAGCTTCGTGGTGGAGGAGAGGGAGTTCAACTTCTCATCGGCATACATTCCAAAGTTTCCGAACACCACGGTTCCGATGGTTTTGGATTGGGCGGTGGGCGACGGGCCGTGCGAGGCGGCCGTAGGTGGCGGGAGGAATGCGTGTCAGGGAAACAGCCGCTGCGACAACCCAGGGTTTTTGGGGGGCCACCGCTGCAGCTGTTTGGAGGGGTTCACTGGGAATCCATATTTGCCCAATGTTGGTTGTCAAGACATCAACGAATGTGATGATCGTAATGCAAACGAGTGTACGGATTTATGTACTAATACGGAAGGAGGTTATAAATGTTCTTGCCCTGATGGATACTCCGGCAATGGCAGATACGACGGCGACGGCTGCGTTCGCCGCCGCCGCTCTCATGTCCTCCTTTTAGCTCTTGGAATCTGCGTGGGCGTCTTGGCGCTGCTAGTGACTTGTTCTTGGTTCTACATCGGATTCAAGAGATGGAAGCTCATCAAGCTGAAGGCCAATTTCTTCGAACGAAACGGAGGCCTAATGTTGGAGCAGCAGCTTTCAATCAGAGACGAAGCCGCACAATCTGCAAAAATCTTCACGGCAGAGGAATTGCAGAAAGCCACCGACAATTACTCCGACGACCGAATCGTCGGCAAAGGCGGCTTCGGAACAGTCTACAAAGGAATCCTCCCAAACGGCGCCGCCGTCGCGATCAAGAAATCGAAGATTGTCGACAAAACTCAGAACAAACAGTTCATCAACGAAGTCGTCGTTCTCTCGCAGATCAACCACAGAAACGCGGTGAGACTCTTAGGCTGCTGCTTGGAAGAAGAAGTTCCGCTTCTCGTCTACGAATTCGTCTCCAACGGCACGCTCTTCGAACACATCCACAGGAAAAAATCGCCGCGGTCAATTCCTTGGAAAATCCGCCTGAAGATCGCATCGGAAACCGCCGGAGTTCTCTCTTACCTTCACTCTTCCGCCACGATTCCGATCATTCACAGAGACGTGAAGTCCACAAACATTCTCCTCGACGAAAATTTCACCGCGAAGGTCTCCGATTTTGGCGCCTCGAAACTCGTCCCCTTAGATCAAGCCGATCTGTCCACGATCGTTCAAGGAACTCTCGGATACCTAGATCCAGAGTATCTCCAAACCAGTCAATTAACAGAGAAGAGCGATGTGTACAGTTTCGGCGTGGTGCTCGTCGAATTGATGACCGGAAAAGTTCCTCTCTCCTTCAGCCGATCCGAGGAAGAACGGAATCTATCGATGTACTTCCTTCTCGCTCTGAAACAGAATCGGCTCGGAGAAATTTTGGACAAAACTCTTGGCGGCGGTGTCGAATTCGAGAAATTGAAGGAAGTTGCGAGCCTGGCAAAGATGTGTTTGAGAGTGAAGGGAGAAGAAAGGCCGACGATGAAGGAAGTTGCCGCAGAGCTCGAAGGTCTGTATCAAATGGTGTACGGTCATCCATGGAATCTGGACGACAATTCCTCGAGTGTGGAAGAAGCAGAGCTTTTCCTTAGCGAGGAA 2175 51.08 SFLWKMQTFSHIVLLIMAAVASHDAEASEALPRQLPITFPNCTDRCGEVEIPYPFGLTPECSFSEAFLITCNSSLNPSKPFIGDVPVVSISIEDGELVIETLVASYCFDANGNTFGSHKEAFLNVDQFTISTRNIFTVVGCSTVSMIGGALRDGESYIAGCASFCSGYRSIVNGSCSGVGCCQMMIPGGLKEARNITLEEGNDISNGSDIYSCGYSFVVEEREFNFSSAYIPKFPNTTVPMVLDWAVGDGPCEAAVGGGRNACQGNSRCDNPGFLGGHRCSCLEGFTGNPYLPNVGCQDINECDDRNANECTDLCTNTEGGYKCSCPDGYSGNGRYDGDGCVRRRRSHVLLLALGICVGVLALLVTCSWFYIGFKRWKLIKLKANFFERNGGLMLEQQLSIRDEAAQSAKIFTAEELQKATDNYSDDRIVGKGGFGTVYKGILPNGAAVAIKKSKIVDKTQNKQFINEVVVLSQINHRNAVRLLGCCLEEEVPLLVYEFVSNGTLFEHIHRKKSPRSIPWKIRLKIASETAGVLSYLHSSATIPIIHRDVKSTNILLDENFTAKVSDFGASKLVPLDQADLSTIVQGTLGYLDPEYLQTSQLTEKSDVYSFGVVLVELMTGKVPLSFSRSEEERNLSMYFLLALKQNRLGEILDKTLGGGVEFEKLKEVASLAKMCLRVKGEERPTMKEVAAELEGLYQMVYGHPWNLDDNSSSVEEAELFLSEE 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9638304 9642408 - MC11g1120 Mch11g1350 680284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1350 725 SMART serkin_6 424 701 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g1350 725 CDD EGF_CA 261 288 - -
Mch11g1350 725 ProSitePatterns Protein kinases ATP-binding region signature. 430 453 IPR017441 GO:0005524(InterPro)
Mch11g1350 725 FunFam Wall-associated receptor kinase 2 394 499 - -
Mch11g1350 725 Pfam Calcium-binding EGF domain 299 333 IPR049883 -
Mch11g1350 725 ProSiteProfiles Protein kinase domain profile. 424 707 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g1350 725 ProSitePatterns Calcium-binding EGF-like domain signature. 299 324 IPR018097 GO:0005509(InterPro)
Mch11g1350 725 SUPERFAMILY EGF/Laminin 298 334 - -
Mch11g1350 725 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 315 326 IPR000152 -
Mch11g1350 725 Pfam Wall-associated receptor kinase galacturonan-binding 42 99 IPR025287 GO:0030247(InterPro)
Mch11g1350 725 SMART egfca_6 252 298 IPR001881 GO:0005509(InterPro)
Mch11g1350 725 SMART egfca_6 299 342 IPR001881 GO:0005509(InterPro)
Mch11g1350 725 Gene3D Laminin 302 343 - -
Mch11g1350 725 Pfam Protein kinase domain 424 691 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g1350 725 CDD EGF_CA 299 332 - -
Mch11g1350 725 FunFam Wall-associated receptor kinase 2 500 718 - -
Mch11g1350 725 SMART egf_5 251 298 IPR000742 -
Mch11g1350 725 SMART egf_5 302 342 IPR000742 -
Mch11g1350 725 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 39 698 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro)
Mch11g1350 725 Gene3D Laminin 258 301 - -
Mch11g1350 725 Gene3D Transferase(Phosphotransferase) domain 1 500 708 - -
Mch11g1350 725 ProSiteProfiles EGF-like domain profile. 248 298 IPR000742 -
Mch11g1350 725 ProSiteProfiles EGF-like domain profile. 299 333 IPR000742 -
Mch11g1350 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g1350 725 Gene3D Phosphorylase Kinase; domain 1 392 499 - -
Mch11g1350 725 FunFam Fibrillin 2 294 337 - -
Mch11g1350 725 CDD STKc_IRAK 430 697 - -
Mch11g1350 725 SUPERFAMILY Protein kinase-like (PK-like) 408 700 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0014 Mch-Chr11:126025 Mch11g1350 Mch-Chr11:9638304 2.15E-209 dispersed
Mch11g1350 Mch-Chr11:9638304 Mch4g1814 Mch-Chr4:21045706 4.41E-224 dispersed
Mch11g1350 Mch-Chr11:9638304 Mch1g1165 Mch-Chr1:14092234 2.39E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77082 PF00069 Pkinase 1.40E-49 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1350 - - - 0.0