Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1380 ATGTCCCGATCGCTGGTGCAGCCGATCGGACAGAAGAGGCTCACCAACGTCGCGGTGGTTCGTTTGAAAAGGCACGGTCTCCGCTTCGAGATTGCTTGTTACAAGAACAAGGTCCTTTCATGGCGTTCTGGCGTGGAGAAAGATTTGGATGAGGTTTTGCAATCGCAGATTGTTTATTCAAATGTTTCAAAAGGAGTTCTTGCGAAAACAAAAGATTTAAAGGCAGCTTTCGACACAGATGATCAGACGGCCATTTGTTTGAAGATTCTAAAAGAAGGGGAACTTCAAATTGCAGTGAAGGAGAGGGAGGCTCAATTATCCAATCAATTTCGTGATATTGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATCGAGCGGCTGATGCGTGAAATTCATTTTGCCATTGATCCAAATCACAGTTCAAAGAAACAGGCACTTGAGGTCATTCATGAGCTCCAAAAACAGTTTCCAATTAAACGTTCACCTATGAGAATACGCTATACTGTACCTGAACAGAATTTTCCATCTCTTCTTGAAAAGTTAAATGCATGGAATGCTAGTAACCTTTCCAATGATCAGTCTGGAAGTCAGCAACGAAGTGTTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCCTTAATGAGTGAACTACAAGGAAGATTTGAAGTTCTCTCTTTCTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATATGATGACGATTTCGACAATGGGGAACTGCCGCCTAGGCAAGTCAAGGAATCGTTGATTCCTCAGCTAAGTGAAGCTTTACAAAGACAGACAATCTCCGTCGAGGGTGAAAATGCACCAAAGGAAGGAAAACGCTGCAGCACATGTAACGTTGCTGTGGGGGATGCTACTCAATTTAGAGAGCATCACAAGGGCGAATGGCATAAGCATAATGTGAAGCGCAAAACCAAGAATCTCCCTCCTCTGACCGAAGAAGAGTGCATGGTTGAATTGGCAATGGGCAATTCCGAGTCCGATTTGAAGGATTATTCATTTTGA 1074 43.2 MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTAICLKILKEGELQIAVKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAIDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTVPEQNFPSLLEKLNAWNASNLSNDQSGSQQRSVICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDFDNGELPPRQVKESLIPQLSEALQRQTISVEGENAPKEGKRCSTCNVAVGDATQFREHHKGEWHKHNVKRKTKNLPPLTEEECMVELAMGNSESDLKDYSF 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9849770 9854569 - MC11g1141 Mch11g1380 680314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1380 357 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Mch11g1380 357 NCBIfam ribosome assembly factor SBDS 13 231 IPR002140 GO:0042256(InterPro)
Mch11g1380 357 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Mch11g1380 357 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Mch11g1380 357 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 248 IPR039100 -
Mch11g1380 357 FunFam SBDS, ribosome maturation factor 100 172 - -
Mch11g1380 357 SUPERFAMILY Hypothetical protein AF0491, middle domain 99 171 IPR037188 -
Mch11g1380 357 ProSitePatterns Zinc finger C2H2 type domain signature. 298 320 IPR013087 -
Mch11g1380 357 Gene3D - 174 251 - -
Mch11g1380 357 Gene3D - 100 172 IPR037188 -
Mch11g1380 357 Gene3D - 1 96 IPR036786 -
Mch11g1380 357 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254(InterPro)
Mch11g1380 357 FunFam SBDS, ribosome maturation factor 3 96 - -
Mch11g1380 357 SUPERFAMILY beta-beta-alpha zinc fingers 287 327 IPR036236 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1380 K14574 - csv:101215380 649.432