Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g1391 | ATGTCGTTCCGCAGTATAGTACGTGATGTTAGGGAGGGGTTTGGAAGTTTGTCCCGGCGTAGTTTTGAGGTGAGACTGCCCGGACACCACCGCGGTAAATCTCATGGATCAGTCCATGATCTACACGACCAACCTCTGGTAATTCAGAACAGCCGTTGGGCTAGCCTCCCACCCGAGCTATTGCAGGATGTAGTCACAAGATTGGAGGAGAGTGAGAGTGTGTGGCCTGCTCGCAAGAATGTTGTTGCTTGTGCGGCTGTTTGTAGGTCATGGAGAGAAATGTGTAAAGAGATAGTAAAATGTCCCGAGTTCTCCGGGAAAATTACCTTCCCTGTCTCCTTAAAGCAGCCAGGGACTCGGGACGGAACCATTCAGTGCTTCATTAAGAGGGACAAATCAAATTTAACTTACCACCTTTACCTTTGCCTAAGTCCCGCCTTACTTGTTGAGAATGGAAAGTTTCTTCTTTCTGCAAAAAGAACAAGGAGAACGACTTGCACCGAGTATGTCATCTCCATGGATGCGGATAATATATCGAGATCGAGCAGCACCTACATTGGAAAACTAAGGTCAAATTTTCTAGGGACCAAGTTCATTATCTATGATACACAGCCTCCATACAACAATGCCCACATTTCCCCACCTGGTCGAAGCCGTAGATTCTACTCGAAAAAAGTTTCTCCAAAGGTCCCAACCGGTAGCTATGACATTGCTCAAGTCACCTATGAGCTGAACGTTCTAGGGACGAGAGGCCCCCGGAAGATGCACTGCACGATGCATTCCATCCCCGCCTCATCCCTTGAACCCGGTGGCACAGTTCCAGGCCAGCCTGAGGTCATCCCTCGACTCCTTGAGGATTCATTCCGAAGTATATCGTTCTCGAAGTCAGTCTTCAATTCTACTGAGTTCAGTAGCTCCCGCTTCTCTGACATTGTTGGCTCACGGGATGAAGAAGAGGTGGAGAAAGAGAGACCACTGATTCTTCGGAACAAGCCACCGCGGTGGCACGAACAATTGCAATGTTGGTGCCTCAACTTCCGAGGGCGAGTCACCGTTGCCTCAGTCAAAAACTTTCAGCTGATCGCCGCAACAGAGCCTTCTTCTTCCACGGCTACGAACCAATCACACCCACCCCAACACGCGCAATCGTCCCAATCCGACCACGACAAGATCATTCTTCAATTTGGGAAGGTTGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTCCAAGCATTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA | 1296 | 48.61 | MSFRSIVRDVREGFGSLSRRSFEVRLPGHHRGKSHGSVHDLHDQPLVIQNSRWASLPPELLQDVVTRLEESESVWPARKNVVACAAVCRSWREMCKEIVKCPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAHISPPGRSRRFYSKKVSPKVPTGSYDIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEPGGTVPGQPEVIPRLLEDSFRSISFSKSVFNSTEFSSSRFSDIVGSRDEEEVEKERPLILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEPSSSTATNQSHPPQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 431 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10006150 | 10009881 | - | MC11g1151 | Mch11g1391 | 680325 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g1391 | 431 | CDD | F-box_AtTLP-like | 53 | 97 | - | - | |
Mch11g1391 | 431 | FunFam | Tubby-like F-box protein | 48 | 101 | - | - | |
Mch11g1391 | 431 | FunFam | Tubby-like F-box protein | 110 | 431 | - | - | |
Mch11g1391 | 431 | ProSitePatterns | Tub family signature 2. | 416 | 431 | IPR018066 | - | |
Mch11g1391 | 431 | Gene3D | Tubby Protein; Chain A | 112 | 425 | IPR025659 | - | |
Mch11g1391 | 431 | ProSitePatterns | Tub family signature 1. | 346 | 359 | IPR018066 | - | |
Mch11g1391 | 431 | SUPERFAMILY | F-box domain | 49 | 97 | IPR036047 | GO:0005515(InterPro) | |
Mch11g1391 | 431 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 431 | IPR025659 | - | |
Mch11g1391 | 431 | PRINTS | Tubby superfamily signature | 328 | 345 | IPR000007 | - | |
Mch11g1391 | 431 | PRINTS | Tubby superfamily signature | 409 | 431 | IPR000007 | - | |
Mch11g1391 | 431 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Mch11g1391 | 431 | PRINTS | Tubby superfamily signature | 234 | 261 | IPR000007 | - | |
Mch11g1391 | 431 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Mch11g1391 | 431 | PRINTS | Tubby superfamily signature | 388 | 407 | IPR000007 | - | |
Mch11g1391 | 431 | PRINTS | Tubby superfamily signature | 346 | 362 | IPR000007 | - | |
Mch11g1391 | 431 | PANTHER | TUBBY-RELATED | 48 | 430 | - | - | |
Mch11g1391 | 431 | Pfam | F-box-like | 53 | 96 | IPR001810 | GO:0005515(InterPro) | |
Mch11g1391 | 431 | MobiDBLite | consensus disorder prediction | 366 | 387 | - | - | |
Mch11g1391 | 431 | Pfam | Tub family | 114 | 426 | IPR000007 | - | |
Mch11g1391 | 431 | Gene3D | - | 48 | 100 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0513 | Mch-Chr10:3356046 | Mch11g1391 | Mch-Chr11:10006150 | 7.57E-244 | dispersed | |
Mch11g1391 | Mch-Chr11:10006150 | Mch4g1886 | Mch-Chr4:21539841 | 2.20E-246 | dispersed | |
Mch11g1391 | Mch-Chr11:10006150 | Mch7g1139 | Mch-Chr7:15273539 | 1.72E-151 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42630 | PF01167 | Tub | 1.70E-118 | CL0395 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g1391 | K19600 | - | csv:101206041 | 826.624 |