Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1391 ATGTCGTTCCGCAGTATAGTACGTGATGTTAGGGAGGGGTTTGGAAGTTTGTCCCGGCGTAGTTTTGAGGTGAGACTGCCCGGACACCACCGCGGTAAATCTCATGGATCAGTCCATGATCTACACGACCAACCTCTGGTAATTCAGAACAGCCGTTGGGCTAGCCTCCCACCCGAGCTATTGCAGGATGTAGTCACAAGATTGGAGGAGAGTGAGAGTGTGTGGCCTGCTCGCAAGAATGTTGTTGCTTGTGCGGCTGTTTGTAGGTCATGGAGAGAAATGTGTAAAGAGATAGTAAAATGTCCCGAGTTCTCCGGGAAAATTACCTTCCCTGTCTCCTTAAAGCAGCCAGGGACTCGGGACGGAACCATTCAGTGCTTCATTAAGAGGGACAAATCAAATTTAACTTACCACCTTTACCTTTGCCTAAGTCCCGCCTTACTTGTTGAGAATGGAAAGTTTCTTCTTTCTGCAAAAAGAACAAGGAGAACGACTTGCACCGAGTATGTCATCTCCATGGATGCGGATAATATATCGAGATCGAGCAGCACCTACATTGGAAAACTAAGGTCAAATTTTCTAGGGACCAAGTTCATTATCTATGATACACAGCCTCCATACAACAATGCCCACATTTCCCCACCTGGTCGAAGCCGTAGATTCTACTCGAAAAAAGTTTCTCCAAAGGTCCCAACCGGTAGCTATGACATTGCTCAAGTCACCTATGAGCTGAACGTTCTAGGGACGAGAGGCCCCCGGAAGATGCACTGCACGATGCATTCCATCCCCGCCTCATCCCTTGAACCCGGTGGCACAGTTCCAGGCCAGCCTGAGGTCATCCCTCGACTCCTTGAGGATTCATTCCGAAGTATATCGTTCTCGAAGTCAGTCTTCAATTCTACTGAGTTCAGTAGCTCCCGCTTCTCTGACATTGTTGGCTCACGGGATGAAGAAGAGGTGGAGAAAGAGAGACCACTGATTCTTCGGAACAAGCCACCGCGGTGGCACGAACAATTGCAATGTTGGTGCCTCAACTTCCGAGGGCGAGTCACCGTTGCCTCAGTCAAAAACTTTCAGCTGATCGCCGCAACAGAGCCTTCTTCTTCCACGGCTACGAACCAATCACACCCACCCCAACACGCGCAATCGTCCCAATCCGACCACGACAAGATCATTCTTCAATTTGGGAAGGTTGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTCCAAGCATTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1296 48.61 MSFRSIVRDVREGFGSLSRRSFEVRLPGHHRGKSHGSVHDLHDQPLVIQNSRWASLPPELLQDVVTRLEESESVWPARKNVVACAAVCRSWREMCKEIVKCPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAHISPPGRSRRFYSKKVSPKVPTGSYDIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEPGGTVPGQPEVIPRLLEDSFRSISFSKSVFNSTEFSSSRFSDIVGSRDEEEVEKERPLILRNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATEPSSSTATNQSHPPQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10006150 10009881 - MC11g1151 Mch11g1391 680325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1391 431 CDD F-box_AtTLP-like 53 97 - -
Mch11g1391 431 FunFam Tubby-like F-box protein 48 101 - -
Mch11g1391 431 FunFam Tubby-like F-box protein 110 431 - -
Mch11g1391 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Mch11g1391 431 Gene3D Tubby Protein; Chain A 112 425 IPR025659 -
Mch11g1391 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Mch11g1391 431 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515(InterPro)
Mch11g1391 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Mch11g1391 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Mch11g1391 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Mch11g1391 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Mch11g1391 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Mch11g1391 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Mch11g1391 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Mch11g1391 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Mch11g1391 431 PANTHER TUBBY-RELATED 48 430 - -
Mch11g1391 431 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Mch11g1391 431 MobiDBLite consensus disorder prediction 366 387 - -
Mch11g1391 431 Pfam Tub family 114 426 IPR000007 -
Mch11g1391 431 Gene3D - 48 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0513 Mch-Chr10:3356046 Mch11g1391 Mch-Chr11:10006150 7.57E-244 dispersed
Mch11g1391 Mch-Chr11:10006150 Mch4g1886 Mch-Chr4:21539841 2.20E-246 dispersed
Mch11g1391 Mch-Chr11:10006150 Mch7g1139 Mch-Chr7:15273539 1.72E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42630 PF01167 Tub 1.70E-118 CL0395 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1391 K19600 - csv:101206041 826.624