Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1394 ATGTTGGGTGACTCCCTTACTTCTTCTTCCTCAGCTGCCCCCGACGCGGCCATCGCCGTTGCGTCGGAGGCGGGGAACCGCCACGACGCAGCGATCGGCGGAGACGTCGCGGGCGAGGAGAATTCGGGTGAGGAGAATGAGCGAGGGAGAGGCGGCGGAGGAGGCGACGACGGCGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGGCAGGAAACTTTGGCGCTCTTGAAAATTCGCTCGGAAATGGATGTGGCTTTTAGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAGTTTCCAGGAAATTAGGGGAGCTTGGGTATCATCGAAGTGCAAAGAAATGCAAGGAGAAATTCGAGAATGTCTACAAATATCACAAAAGAACCAAAGAAGTTAGAAGTGGGAAACCAGATAGCAAAACTTACAAGTTTTTTGAACAATTAGAAGCTCTTGATAATCACCCTCCTAATTTCCACCCCCATTTGCCTAAACTTCCTCCTCCACCACCCACAACCGTGGCGGCGCCACTGCCACCGCCACCGCCGACCACCGTCGTCTCCCACATTCCCTCCACTGTTCCATCGCCCGCCGCGCCGCCCCACTTGATGAACATATCATTCTCCCAACCAAACCCCACAATTCACCTCCAATCACAACCGCCCCCGCCGCCAGTGCCATTGAACCCTACCAACTTGACAACCGTCGCTCCTTTCTTGGCAGCGGGATTTCATAGTATTGAAGCGGATCTCATCTCGAACTCGACGTCTGACGATGTCGAGGAGTCGACATCGTCAGATGAGGCGTCGAGGCGGAGGAAGAGGAAGAGGAAATGGAAGGACTTCTTCGAGAGATTGATGAGGGAGGTGATCCAAAAGCAAGAGGAGATGCAAAAGAGATTCTTGGAGGCCATTGAGAAGAGGGAGCAAGAGCGAGTTGCGAGGGAAGAGGCTTGGAGGGTTCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTTTAGCTCAAGAGAGATCAATGGCCGCGGCGAAAGACGCCGCCATAACGTCCTTCTTGCAAAAAATAACCGAAGGACAACAACAAAACAATAACACCAACCCCCCGTCGCAACCGCCATTGCGACCGCCACCGCCACCGCTGCAACAACAACTGGTCATACCCACTTCAAATCCGTCGCCAGCACCGCCGCCACCGCCACCGGCTTCCACATTGCAAGTTATTGTGGCGAATTCCAGCCCACAAAAGGTGGTGAGCCATAATGAAATGTTGCAGTTGGAGATTGTGAAAACGGATCATAATGGTGGGGAGAGCTACAGCATGAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTTGAAGTTGAAGCACTTATAAAATTGAGGACAAATCTTGAAGCTAAATATCAAGAGAATGGGCCAAAAGGGCCACTTTGGGAGGAGATTTCATCAGCCATGAAGAAACTTGGGTACAATAGAAATCCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAATACTTCAAGAAAGTGAAGGAGAGTAAGAAGACAAGGCCTGAGGATTCAAAAACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTATAGGGAGAAGAGCGGCAACAACGGCAACAACGTCAACAACAGCAAGCTCGATAATATCGTAATCGGATCATCGACGCGGATTTTGCAGCACCAGCAGCAGCCGTTGATGGTGCGGCCCGAGCAACAATGGCCTCCCCAGCAGGAGCTTGCCCGCCCCGACTCAGGCAATGAAGAGATGGAGAGCGAACCGATGGATCGGGATGATAAGGATGAAGACGATGAAGACGACGACGACGAAGAGGGTGGTGGGAATTATGAGATTGTGGCTAGCAAACCAGCTTCTGTGAGTGCTGCAGAGTGA 1902 51.63 MLGDSLTSSSSAAPDAAIAVASEAGNRHDAAIGGDVAGEENSGEENERGRGGGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQVSRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALDNHPPNFHPHLPKLPPPPPTTVAAPLPPPPPTTVVSHIPSTVPSPAAPPHLMNISFSQPNPTIHLQSQPPPPPVPLNPTNLTTVAPFLAAGFHSIEADLISNSTSDDVEESTSSDEASRRRKRKRKWKDFFERLMREVIQKQEEMQKRFLEAIEKREQERVAREEAWRVQEMAKINREREILAQERSMAAAKDAAITSFLQKITEGQQQNNNTNPPSQPPLRPPPPPLQQQLVIPTSNPSPAPPPPPPASTLQVIVANSSPQKVVSHNEMLQLEIVKTDHNGGESYSMSPASSSSRWPKVEVEALIKLRTNLEAKYQENGPKGPLWEEISSAMKKLGYNRNPKRCKEKWENINKYFKKVKESKKTRPEDSKTCPYFHQLDALYREKSGNNGNNVNNSKLDNIVIGSSTRILQHQQQPLMVRPEQQWPPQQELARPDSGNEEMESEPMDRDDKDEDDEDDDDEEGGGNYEIVASKPASVSAAE 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10063106 10066500 + MC11g1153 Mch11g1394 680328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1394 633 MobiDBLite consensus disorder prediction 570 633 - -
Mch11g1394 633 MobiDBLite consensus disorder prediction 29 66 - -
Mch11g1394 633 MobiDBLite consensus disorder prediction 367 402 - -
Mch11g1394 633 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
Mch11g1394 633 Pfam Myb/SANT-like DNA-binding domain 446 533 IPR044822 -
Mch11g1394 633 ProSiteProfiles Myb-like domain profile. 440 504 IPR001005 -
Mch11g1394 633 PANTHER FI21293P1 44 599 - -
Mch11g1394 633 SMART sant 444 506 IPR001005 -
Mch11g1394 633 SMART sant 63 125 IPR001005 -
Mch11g1394 633 FunFam Trihelix transcription factor GT-2 448 509 - -
Mch11g1394 633 Coils Coil 290 310 - -
Mch11g1394 633 MobiDBLite consensus disorder prediction 594 617 - -
Mch11g1394 633 Gene3D - 448 509 - -
Mch11g1394 633 Gene3D - 67 128 - -
Mch11g1394 633 CDD GT1 447 511 - -
Mch11g1394 633 FunFam Trihelix transcription factor GT-2 67 128 - -
Mch11g1394 633 MobiDBLite consensus disorder prediction 254 275 - -
Mch11g1394 633 MobiDBLite consensus disorder prediction 41 55 - -
Mch11g1394 633 MobiDBLite consensus disorder prediction 358 403 - -
Mch11g1394 633 ProSiteProfiles Myb-like domain profile. 65 123 IPR001005 -
Mch11g1394 633 CDD GT1 65 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1394 Mch-Chr11:10063106 Mch2g1820 Mch-Chr2:17628389 8.24E-111 dispersed
Mch11g1394 Mch-Chr11:10063106 Mch11g1395 Mch-Chr11:10099829 8.71E-109 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42632 PF13837 Myb_DNA-bind_4 7.10E-22 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1394 - - - 0.0