Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g1394 | ATGTTGGGTGACTCCCTTACTTCTTCTTCCTCAGCTGCCCCCGACGCGGCCATCGCCGTTGCGTCGGAGGCGGGGAACCGCCACGACGCAGCGATCGGCGGAGACGTCGCGGGCGAGGAGAATTCGGGTGAGGAGAATGAGCGAGGGAGAGGCGGCGGAGGAGGCGACGACGGCGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGGCAGGAAACTTTGGCGCTCTTGAAAATTCGCTCGGAAATGGATGTGGCTTTTAGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAGTTTCCAGGAAATTAGGGGAGCTTGGGTATCATCGAAGTGCAAAGAAATGCAAGGAGAAATTCGAGAATGTCTACAAATATCACAAAAGAACCAAAGAAGTTAGAAGTGGGAAACCAGATAGCAAAACTTACAAGTTTTTTGAACAATTAGAAGCTCTTGATAATCACCCTCCTAATTTCCACCCCCATTTGCCTAAACTTCCTCCTCCACCACCCACAACCGTGGCGGCGCCACTGCCACCGCCACCGCCGACCACCGTCGTCTCCCACATTCCCTCCACTGTTCCATCGCCCGCCGCGCCGCCCCACTTGATGAACATATCATTCTCCCAACCAAACCCCACAATTCACCTCCAATCACAACCGCCCCCGCCGCCAGTGCCATTGAACCCTACCAACTTGACAACCGTCGCTCCTTTCTTGGCAGCGGGATTTCATAGTATTGAAGCGGATCTCATCTCGAACTCGACGTCTGACGATGTCGAGGAGTCGACATCGTCAGATGAGGCGTCGAGGCGGAGGAAGAGGAAGAGGAAATGGAAGGACTTCTTCGAGAGATTGATGAGGGAGGTGATCCAAAAGCAAGAGGAGATGCAAAAGAGATTCTTGGAGGCCATTGAGAAGAGGGAGCAAGAGCGAGTTGCGAGGGAAGAGGCTTGGAGGGTTCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTTTAGCTCAAGAGAGATCAATGGCCGCGGCGAAAGACGCCGCCATAACGTCCTTCTTGCAAAAAATAACCGAAGGACAACAACAAAACAATAACACCAACCCCCCGTCGCAACCGCCATTGCGACCGCCACCGCCACCGCTGCAACAACAACTGGTCATACCCACTTCAAATCCGTCGCCAGCACCGCCGCCACCGCCACCGGCTTCCACATTGCAAGTTATTGTGGCGAATTCCAGCCCACAAAAGGTGGTGAGCCATAATGAAATGTTGCAGTTGGAGATTGTGAAAACGGATCATAATGGTGGGGAGAGCTACAGCATGAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTTGAAGTTGAAGCACTTATAAAATTGAGGACAAATCTTGAAGCTAAATATCAAGAGAATGGGCCAAAAGGGCCACTTTGGGAGGAGATTTCATCAGCCATGAAGAAACTTGGGTACAATAGAAATCCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAATACTTCAAGAAAGTGAAGGAGAGTAAGAAGACAAGGCCTGAGGATTCAAAAACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTATAGGGAGAAGAGCGGCAACAACGGCAACAACGTCAACAACAGCAAGCTCGATAATATCGTAATCGGATCATCGACGCGGATTTTGCAGCACCAGCAGCAGCCGTTGATGGTGCGGCCCGAGCAACAATGGCCTCCCCAGCAGGAGCTTGCCCGCCCCGACTCAGGCAATGAAGAGATGGAGAGCGAACCGATGGATCGGGATGATAAGGATGAAGACGATGAAGACGACGACGACGAAGAGGGTGGTGGGAATTATGAGATTGTGGCTAGCAAACCAGCTTCTGTGAGTGCTGCAGAGTGA | 1902 | 51.63 | MLGDSLTSSSSAAPDAAIAVASEAGNRHDAAIGGDVAGEENSGEENERGRGGGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQVSRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALDNHPPNFHPHLPKLPPPPPTTVAAPLPPPPPTTVVSHIPSTVPSPAAPPHLMNISFSQPNPTIHLQSQPPPPPVPLNPTNLTTVAPFLAAGFHSIEADLISNSTSDDVEESTSSDEASRRRKRKRKWKDFFERLMREVIQKQEEMQKRFLEAIEKREQERVAREEAWRVQEMAKINREREILAQERSMAAAKDAAITSFLQKITEGQQQNNNTNPPSQPPLRPPPPPLQQQLVIPTSNPSPAPPPPPPASTLQVIVANSSPQKVVSHNEMLQLEIVKTDHNGGESYSMSPASSSSRWPKVEVEALIKLRTNLEAKYQENGPKGPLWEEISSAMKKLGYNRNPKRCKEKWENINKYFKKVKESKKTRPEDSKTCPYFHQLDALYREKSGNNGNNVNNSKLDNIVIGSSTRILQHQQQPLMVRPEQQWPPQQELARPDSGNEEMESEPMDRDDKDEDDEDDDDEEGGGNYEIVASKPASVSAAE | 633 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10063106 | 10066500 | + | MC11g1153 | Mch11g1394 | 680328 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g1394 | 633 | MobiDBLite | consensus disorder prediction | 570 | 633 | - | - | |
Mch11g1394 | 633 | MobiDBLite | consensus disorder prediction | 29 | 66 | - | - | |
Mch11g1394 | 633 | MobiDBLite | consensus disorder prediction | 367 | 402 | - | - | |
Mch11g1394 | 633 | Pfam | Myb/SANT-like DNA-binding domain | 65 | 151 | IPR044822 | - | |
Mch11g1394 | 633 | Pfam | Myb/SANT-like DNA-binding domain | 446 | 533 | IPR044822 | - | |
Mch11g1394 | 633 | ProSiteProfiles | Myb-like domain profile. | 440 | 504 | IPR001005 | - | |
Mch11g1394 | 633 | PANTHER | FI21293P1 | 44 | 599 | - | - | |
Mch11g1394 | 633 | SMART | sant | 444 | 506 | IPR001005 | - | |
Mch11g1394 | 633 | SMART | sant | 63 | 125 | IPR001005 | - | |
Mch11g1394 | 633 | FunFam | Trihelix transcription factor GT-2 | 448 | 509 | - | - | |
Mch11g1394 | 633 | Coils | Coil | 290 | 310 | - | - | |
Mch11g1394 | 633 | MobiDBLite | consensus disorder prediction | 594 | 617 | - | - | |
Mch11g1394 | 633 | Gene3D | - | 448 | 509 | - | - | |
Mch11g1394 | 633 | Gene3D | - | 67 | 128 | - | - | |
Mch11g1394 | 633 | CDD | GT1 | 447 | 511 | - | - | |
Mch11g1394 | 633 | FunFam | Trihelix transcription factor GT-2 | 67 | 128 | - | - | |
Mch11g1394 | 633 | MobiDBLite | consensus disorder prediction | 254 | 275 | - | - | |
Mch11g1394 | 633 | MobiDBLite | consensus disorder prediction | 41 | 55 | - | - | |
Mch11g1394 | 633 | MobiDBLite | consensus disorder prediction | 358 | 403 | - | - | |
Mch11g1394 | 633 | ProSiteProfiles | Myb-like domain profile. | 65 | 123 | IPR001005 | - | |
Mch11g1394 | 633 | CDD | GT1 | 65 | 130 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g1394 | Mch-Chr11:10063106 | Mch2g1820 | Mch-Chr2:17628389 | 8.24E-111 | dispersed | |
Mch11g1394 | Mch-Chr11:10063106 | Mch11g1395 | Mch-Chr11:10099829 | 8.71E-109 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42632 | PF13837 | Myb_DNA-bind_4 | 7.10E-22 | CL0123 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g1394 | - | - | - | 0.0 |