Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1395 ATGGATGGCGACTCCACCCTTCTGGCCAGCTCCGGCGAGGCGGCACCACCGCCCGCCGAAGCTGTGGAAGAAGAAGAAGCTCATGACGAAGCTGGTGGCGGCGGCGGCGGGTCGAATTCCGGCGAAGAAGGCGACAAGAACAATTACGGCGGCAACCGGTGGCCTCGGCCGGAGACCTTGGCTCTGTTGAAGATAAGATCCGATATGGATGCAGTTTTTAGAGACGCAACTCATAAAGCTCCATTATGGGATGAAGTTTCAAGGAAGTTGGGAGAGCTTGGATTCAATCGGACTCCAAAGAAATGCAAGGAAAAATTCGAGAATGTTTATAAGTATCACAAAAGAACCAAAGAAGGCCGAAGTGGGAAATCCGATAATAGCAAAAAGGTGTATAGATTTTCCGATGAATTGGAGGCTTTTGGCAATCATCATCATCACAATCACATTTCATTTCAATCTCACCACCACCCAGCACCGGCACCGCCGCTGCCAATTCCTCGGCCGATGACGACGACGGTGACGGTGACGGTTCCGCCTTACAATCCTCCGGCGAAAATAGTCACATCTACTACTGTTCCATCGACCATGAACAACACAACAAACAACAACTCCTTGCCACCCAAGTCCTCCATCCCACTTTCCAATTTGCCAAAAATGGCCGCCAATGTGATGTTTTCGAGCTCGACTTCGTCGTCGACCGCGTCGGAGGAAGACCCGTTTCGGAGCCGGAGGAGGAAGAGGAGGAAGAGGAAGTGGAGTGATTTCTTCGTGAGGCTAACAAAGGAGGTGATAGAGAAGCAAGAGGGGCTCCAACTCAAGTTCTTAGAAGCATTGGAGAGAATTGAGAATCAAAGGAAGTTGAGAGATGAAGCATGGAGAATGAAAGAGCTGACAAGGGTGAATCAAGAACACGAAGTTCTCGTCCAAGAGATGTCGGTCGCTGCCGCCAAAGACGCCGCCGTCGTAGCATTTCTACAAAAAATATCCCCTTCTCCATTCCCATTCTCATCACCACTACCGCCGCAGTCGCAGCTGCAGTCAGGTCAGCTGCAGAACCACGACGAGAAAGAAAAGGTGACCACCGCTGTAGGAAACAGTCCATCGTCAAGATGGCCAAAGACTGAAGTGGAAGCACTAATAAGGCTGAGGACAGAGATGGAAATGAAGTACCAAGATCAGAATGGGCCAAAAGGGCTATTATGGGAAGAGATTTCAGCAGCCATGAGAGGGCTTGGATACAACAGAAGCTCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAATACTTCAAGAAGGTCAAAGACAGCAACAAGAAGAGGCCAGAAGATTCCAAGACATGTCCCTACTTCCACCAATTGGATGCTCTATACAAAGAGAAAGAAAAAAACACAACTTTTGACATCAATAGCCAAATGGAGCCATTGATGGTTGAGCCAGAGCAACAATGGCCACCTCCTCCATTGCAGCCTAATCAAATCATGGTAAATGGTGAAGGAATTCATGAACAAGAAGAAGAGGAAGAAGAAGAAGATGATGATGATGGAGGCAGTAGTAGCACAGATGTGGAAAATTGA 1578 48.29 MDGDSTLLASSGEAAPPPAEAVEEEEAHDEAGGGGGGSNSGEEGDKNNYGGNRWPRPETLALLKIRSDMDAVFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKEGRSGKSDNSKKVYRFSDELEAFGNHHHHNHISFQSHHHPAPAPPLPIPRPMTTTVTVTVPPYNPPAKIVTSTTVPSTMNNTTNNNSLPPKSSIPLSNLPKMAANVMFSSSTSSSTASEEDPFRSRRRKRRKRKWSDFFVRLTKEVIEKQEGLQLKFLEALERIENQRKLRDEAWRMKELTRVNQEHEVLVQEMSVAAAKDAAVVAFLQKISPSPFPFSSPLPPQSQLQSGQLQNHDEKEKVTTAVGNSPSSRWPKTEVEALIRLRTEMEMKYQDQNGPKGLLWEEISAAMRGLGYNRSSKRCKEKWENINKYFKKVKDSNKKRPEDSKTCPYFHQLDALYKEKEKNTTFDINSQMEPLMVEPEQQWPPPPLQPNQIMVNGEGIHEQEEEEEEEDDDDGGSSSTDVEN 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10099829 10102356 - MC11g1154 Mch11g1395 680329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1395 525 MobiDBLite consensus disorder prediction 335 370 - -
Mch11g1395 525 MobiDBLite consensus disorder prediction 148 169 - -
Mch11g1395 525 CDD GT1 52 117 - -
Mch11g1395 525 MobiDBLite consensus disorder prediction 188 209 - -
Mch11g1395 525 PANTHER FI21293P1 26 503 - -
Mch11g1395 525 FunFam Trihelix transcription factor GT-2 371 433 - -
Mch11g1395 525 FunFam Trihelix transcription factor GT-2 54 115 - -
Mch11g1395 525 Pfam Myb/SANT-like DNA-binding domain 52 132 IPR044822 -
Mch11g1395 525 Pfam Myb/SANT-like DNA-binding domain 369 457 IPR044822 -
Mch11g1395 525 SMART sant 50 112 IPR001005 -
Mch11g1395 525 SMART sant 367 430 IPR001005 -
Mch11g1395 525 MobiDBLite consensus disorder prediction 502 525 - -
Mch11g1395 525 ProSiteProfiles Myb-like domain profile. 369 428 IPR001005 -
Mch11g1395 525 MobiDBLite consensus disorder prediction 1 54 - -
Mch11g1395 525 ProSiteProfiles Myb-like domain profile. 46 110 IPR001005 -
Mch11g1395 525 CDD GT1 369 435 - -
Mch11g1395 525 Gene3D - 54 115 - -
Mch11g1395 525 Gene3D - 371 433 - -
Mch11g1395 525 MobiDBLite consensus disorder prediction 225 245 - -
Mch11g1395 525 MobiDBLite consensus disorder prediction 477 525 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1395 Mch-Chr11:10099829 Mch2g1820 Mch-Chr2:17628389 7.34E-94 dispersed
Mch11g1394 Mch-Chr11:10063106 Mch11g1395 Mch-Chr11:10099829 8.71E-109 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42633 PF13837 Myb_DNA-bind_4 1.20E-22 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1395 - - - 0.0