Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1401 ATGGGTCGGAAGAAGCCAACTGCACGGGATGATGACGGCGCTCCCGCGGCAGCTCAGGGTGGTGGGAAGTCGAAGAAAAAGACATTTGCAGTAGACGACGATGAGTACTCCATTGGAACTGAATTGTCTGAAGAAGCCCAAGTTCAGGAGGAGAAGGTCGTGATAACGGGGAAGAAGAAGGGTAAGAAGGGTAATTCAAAAGCTTCACAACTTAAAGAGGAAGAGGACGAGGAGGATGGGGATGGTGTTTCAGAGATTGTTATCACCGGGAAAAAGAAGGGTAAGTCGAAGAAGGGTGGAAGTAGCAGTGCTTTCACTGCTTCCGCTTTTGGTTTGCTTGATGAGGAGGGGAATGATGGCGCTGCTGATGATGATGATGAAGAATCTGTGGTAACCGGGGAAAAGGATGATGATGAAGGGGATGATTCCGTGATCAATTTTTCAGGTAAGAAGAAGTCGTCTAAGTCTTCTAAGAAGACTGGTTTTTCCGCTGCGTTCAGTGCTCTTGATGATGAGAATGATGAAGATGTGATTGATAATGAGATCAGAGTTGATGAAGATATTGATGACGAGCCTGTTATTGCATTTACAGGTAAGAAAAAGTCATCGAAAGGTGGTAAGAAGGCTGGGAATACATTTACAGCTTCTGGTTTTAGTGGTCTTGATAATGAGGATGAGGATGGAGATGCTAAGAAGGATGAGGATGAAGATATTGCATCAATTAGCTTCTCGGGTAAGAAAAAGAAGTCATCCAAGGCTTCAAAGAAAAGTGGCAATTTGTTTAGTGCAGCATTCCCTGATGAGGAAAATGATGGGGATGCTTCTATTTCAGAGCCAAATAAATTAAATGTTGATGGTGTTGATGAAGATGATGCCACTGTAATTGCATTTTCTGGAAAGAAAAAGTCCTCTAAGAAGAAAGGCAGCGGTATGGTTACTGCATTAAGTGATGAAAGTGTGCTGGGCAATGAAGTAAGAGATGTAGTCGGATCTGAAATATTGAATACAGCAAGTAGCAATATTGATTCTGATTTATCAAAAGCTAACAAGATGGAGGGGGTAGCAGAAACTTCAAAAAATAAGAAGAAAAAGAAAAAGAGTGGAAGGACTGCTCAAGAAGAAGATGATTTGGATAAGATTCTTGCTGAGCTAGGAGAGGGGCCTCCTACATCAAAACCAGCAGACCCTCCTCTTCCTTCACAAGAGGACAAAGTTGAGAATCCACCTGAGCTTGTTGCTCCTCCTGATGCATCAGCTGAAAAGGAAGCTGAAGAAGAGAGCACAGAATCAGCTGCAGCAAGGAAGAAGAAAAAGAAGAAGGAGAAGGAAAAGGAAAAAAAAGCTGCAGCAGCGGCCGCAGCAGCTGCTGCTGATGAGAAAATTGAGGAAGTAAACACTGAAATTATAGAACCCAAAAAAGGTGCTGCAAAAAGTAAAGTGCCCGAGAAGAAAGTGCCAAAGCATGTTAGGGAGATGCAAGAGGCAATGGCTAGGAGAAAAGAAGAAGAAGAAAGAAGGAAAAGGGAGGAAGAAGAGAGGTTGAGAAAGGAAGAAGAGGAGAGGCGTAGGCAAGAAGAACTTGAAAGACAAGCTGAGGAGGCTAAGCGTAGGAAAAAGGAAAGAGAAAAAGAGAAGCTCCTACGAAAGAAACAGGAAGGCAAGCTGCTAACAGGGAAGCAAAAGGAAGAACAACGTAGGTTGGAGGCAATGAGGAACCAGATACTAGCAAATGCCGGGGGTTTACCTCTAGCTACTTCTGATCCTAGTGCACCAGCTAAGCGACCAAAATACCAGTCAAAGAAGACTAAACCAGCACATCATCAAACAAATGGGAGTGCTCAAACTAAGGTAGTGGAACATATGGAAGAAAAAACACAAGAAAAAGATGTGGTAGAGACTGAATTATTGGAGTCTGAGAAGATTGAAGATGTGGAGGAGTTGATGCCCGTGGAAGAAAAATCAGATGTTGTTGAGGCTACTGAAGATAATGAAGTTCAAGAAGATGAAGATGAGGATGAATGGGATGCAAAGAGTTGGGATGATGCTGTTGTTGATCTTTCCTTAAAAAGTTCCTTTGCTGATGAGGAGCTTGAATCAGAGCCTGAGAATGGCATGAAAAAAGATAGAAAGAATGGTGCACCAGCTGCACGTGATGCAGCTGCTCCTGCCCAAAAGAATTTACCTTCTCAGCCTTTAAAATCTCAAGATATTGAAAACAAAAAGAAGCAGCATGAGGCTGAGATTGTGGACAAGGACAAAAGAAAAGATGATGCTGTTAAGAAAAAGGCTCCAATTCCAGATGTTACTCCTAAACAACAGGAAGAAAATCTCCGCTCACCCATCTGCTGTATTATGGGGCATGTTGATACTGGTAAAACCAAGCTATTGGACTGTATTCGGGGTACAAATGTTCAAGAGGGAGAGGCAGGAGGTATTACTCAGCAGATTGGGGCAACATATTTTCCTGCTGAAAACATTCGTGAAAGGACTAGGGAACTGAAAGCTGATGCAAAGCTGAAGGTTCCTGGCTTACTTGTTATTGATACCCCTGGGCACGAGTCCTTTACCAACTTACGTTCTCGTGGTTCGGGTTTATGTGATCTTGCAATTTTGGTTGTTGACATCATGCATGGCTTAGAGCCACAAACAATAGAATCACTTAATCTCTTGAGAATGAGAAACACAGAATTTATTGTTGCTCTGAATAAGGTGGACAGACTTTATGGGTGGAAAACTATCCGCAATGCACCAATACTTAAAACAATGAAGCAGCAATCCAAGGATGTTCAGAATGAGTTCAATATGAGGCTTATTCAGATTATCACTCAATTTAAAGAGCAGGGATTGAATACTGAGTTGTATTATAAAAACAAAGAAATGGGGGAGACTTTCAGTATAGTACCTACAAGTGCTGTTACTGGTGAAGGTATTCCAGACTTGTTATTATTATTGGTGCAGTGGGCCCAGAAAACCATGACGGAGAAACTTACGTATAGTGATGAAGTGCAGTGTACGGTCTTAGAGGTCAAAGTTGTTGAAGGCCACGGAACCACTATTGATGTCATATTGGTTAATGGTGTGCTGCATGAAGGAGATCAAATAGTTGTTTGTGGCATGCAGGCAGGCCCAATTGTTACTACTATTCGAGCCCTGTTGACACCCCATCCAATGAAGGAGCTCCGAGTGAAGGGAACATATCTGCATCACAAGGAAATCAAGGCTGCTCAGGGAATCAAAATTACTGGACAGGGTCTTGAGCATGCTATTGCTGGCACCAGTCTTCATGTGGTAGGTCCTGAGGATGATTTGGATGACATCAAGGATTCAGCTATGGAAGATATGAAGTCAGTTTTGAGCAGGATAGACAAGACTGGTGAGGGAGTCTGTGTTCAAGCATCTACACTTGGTTCCTTGGAAGCATTGTTGGAGTTTTTGAAGTCCCCAGCAGTGACCATTCCTGTTAGTGGAATAAGTATAGGACCTGTTCATAAAAAAGACGTCATGAAAGCTAGTGTAATGCTTGAAAAGAAAAAAGAATATGCCACTATTTTGGCTTTTGATGTTAAAGTGACTCCAGAAGCCCGAGAACTTGCTGATGAGCTGGGAGTGAAGATTTTTATTGCTGATATCATTTATCACTTGTTCGACCAATTTAAGGCCTATATTGATAATCTTAAAGAGGAAAAGAAGAAGGAAGCTGCTGAGGAAGCAGTCTTTCCTTGTGTTCTCAAGATTTTACCAAATTGCATTTTCAACAAGAAGGATCCAATCGTGTTGGGGGTTGATGTAATTGATGGCATTGCCAAGGTTGGCACACCAATTTGTATTCCTCAAAGGGAATTTATAGATATTGGTCGCATTGCATCTATTGAAAATAATCACAAACCTGTTGATTATGCGAAGAAAGGGCAGAAGATAGCCATTAAGATAGTTGGCCATTCTTCGGAGGAGCAGCAAAAGATGTATGGTAGGCATTTTGATTTAGAAGATGAACTTGTCAGCCACATATCAAGGAAGTCCATTGACCTACTCAAAGCCAATTATCGGGATGACTTGTCCATGGATGAGTGGAGACTGTTGGTGAAACTGAAGAACCTTTTCAAGATACAATGA 4113 42.11 MGRKKPTARDDDGAPAAAQGGGKSKKKTFAVDDDEYSIGTELSEEAQVQEEKVVITGKKKGKKGNSKASQLKEEEDEEDGDGVSEIVITGKKKGKSKKGGSSSAFTASAFGLLDEEGNDGAADDDDEESVVTGEKDDDEGDDSVINFSGKKKSSKSSKKTGFSAAFSALDDENDEDVIDNEIRVDEDIDDEPVIAFTGKKKSSKGGKKAGNTFTASGFSGLDNEDEDGDAKKDEDEDIASISFSGKKKKSSKASKKSGNLFSAAFPDEENDGDASISEPNKLNVDGVDEDDATVIAFSGKKKSSKKKGSGMVTALSDESVLGNEVRDVVGSEILNTASSNIDSDLSKANKMEGVAETSKNKKKKKKSGRTAQEEDDLDKILAELGEGPPTSKPADPPLPSQEDKVENPPELVAPPDASAEKEAEEESTESAAARKKKKKKEKEKEKKAAAAAAAAAADEKIEEVNTEIIEPKKGAAKSKVPEKKVPKHVREMQEAMARRKEEEERRKREEEERLRKEEEERRRQEELERQAEEAKRRKKEREKEKLLRKKQEGKLLTGKQKEEQRRLEAMRNQILANAGGLPLATSDPSAPAKRPKYQSKKTKPAHHQTNGSAQTKVVEHMEEKTQEKDVVETELLESEKIEDVEELMPVEEKSDVVEATEDNEVQEDEDEDEWDAKSWDDAVVDLSLKSSFADEELESEPENGMKKDRKNGAPAARDAAAPAQKNLPSQPLKSQDIENKKKQHEAEIVDKDKRKDDAVKKKAPIPDVTPKQQEENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTRELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDLAILVVDIMHGLEPQTIESLNLLRMRNTEFIVALNKVDRLYGWKTIRNAPILKTMKQQSKDVQNEFNMRLIQIITQFKEQGLNTELYYKNKEMGETFSIVPTSAVTGEGIPDLLLLLVQWAQKTMTEKLTYSDEVQCTVLEVKVVEGHGTTIDVILVNGVLHEGDQIVVCGMQAGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAQGIKITGQGLEHAIAGTSLHVVGPEDDLDDIKDSAMEDMKSVLSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVTIPVSGISIGPVHKKDVMKASVMLEKKKEYATILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNLKEEKKKEAAEEAVFPCVLKILPNCIFNKKDPIVLGVDVIDGIAKVGTPICIPQREFIDIGRIASIENNHKPVDYAKKGQKIAIKIVGHSSEEQQKMYGRHFDLEDELVSHISRKSIDLLKANYRDDLSMDEWRLLVKLKNLFKIQ 1370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10212495 10225140 + MC11g1157 Mch11g1401 680335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1401 1370 MobiDBLite consensus disorder prediction 460 569 - -
Mch11g1401 1370 Coils Coil 485 552 - -
Mch11g1401 1370 Coils Coil 423 467 - -
Mch11g1401 1370 Coils Coil 734 754 - -
Mch11g1401 1370 Gene3D Translation factors 1233 1370 - -
Mch11g1401 1370 Gene3D Translation factors 1000 1119 - -
Mch11g1401 1370 MobiDBLite consensus disorder prediction 367 382 - -
Mch11g1401 1370 MobiDBLite consensus disorder prediction 117 141 - -
Mch11g1401 1370 FunFam eukaryotic translation initiation factor 5B 1000 1120 - -
Mch11g1401 1370 PRINTS GTP-binding elongation factor signature 897 906 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Mch11g1401 1370 PRINTS GTP-binding elongation factor signature 845 855 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Mch11g1401 1370 PRINTS GTP-binding elongation factor signature 781 794 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Mch11g1401 1370 PRINTS GTP-binding elongation factor signature 861 872 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Mch11g1401 1370 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 429 1369 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER)
Mch11g1401 1370 MobiDBLite consensus disorder prediction 169 185 - -
Mch11g1401 1370 CDD IF2_eIF5B 780 990 - -
Mch11g1401 1370 Pfam Translation-initiation factor 2 1107 1219 IPR023115 -
Mch11g1401 1370 Pfam Elongation factor Tu domain 4 1240 1313 IPR029459 -
Mch11g1401 1370 MobiDBLite consensus disorder prediction 334 773 - -
Mch11g1401 1370 FunFam Eukaryotic translation initiation factor 5B 1233 1370 - -
Mch11g1401 1370 FunFam Eukaryotic translation initiation factor 5B 771 999 - -
Mch11g1401 1370 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1103 1232 IPR036925 -
Mch11g1401 1370 Gene3D - 771 999 IPR027417 -
Mch11g1401 1370 MobiDBLite consensus disorder prediction 691 714 - -
Mch11g1401 1370 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 777 993 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Mch11g1401 1370 FunFam Eukaryotic translation initiation factor 5B 1120 1226 - -
Mch11g1401 1370 MobiDBLite consensus disorder prediction 417 436 - -
Mch11g1401 1370 MobiDBLite consensus disorder prediction 617 660 - -
Mch11g1401 1370 NCBIfam small GTP-binding protein domain 782 907 IPR005225 GO:0005525(InterPro)
Mch11g1401 1370 MobiDBLite consensus disorder prediction 192 321 - -
Mch11g1401 1370 Gene3D - 1120 1226 IPR036925 -
Mch11g1401 1370 MobiDBLite consensus disorder prediction 166 185 - -
Mch11g1401 1370 Pfam Elongation factor Tu GTP binding domain 780 989 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Mch11g1401 1370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 773 1069 IPR027417 -
Mch11g1401 1370 CDD aeIF5B_II 1001 1112 - -
Mch11g1401 1370 SUPERFAMILY Translation proteins 1237 1369 IPR009000 -
Mch11g1401 1370 Coils Coil 1215 1235 - -
Mch11g1401 1370 MobiDBLite consensus disorder prediction 1 160 - -
Mch11g1401 1370 MobiDBLite consensus disorder prediction 735 768 - -
Mch11g1401 1370 MobiDBLite consensus disorder prediction 661 678 - -
Mch11g1401 1370 CDD IF2_aeIF5B_IV 1241 1336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0884 Mch-Chr11:6001821 Mch11g1401 Mch-Chr11:10212495 3.09E-25 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1401 K03243 - csv:101204360 1990.31