Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1404 ATGCTGATGGAGAGACCCAAATTCTCGGCGAGGAAGCCACCGCAAGCGGCGGCGATGGATATCGACCAGATGCCGGAAAATCCCCACCGCGGTTCCCACCACCGCCGCTCCCACTCCGACAGTTCCTTCCGCTTCCCAAACCTCGACGACCTTCTCTTCTTCGACCCCTCGGAGCTTGACCTTTCGATTCTCTCCTCCCCTTCTCCTCCCCGAGCCGGCGGCGCTCCCATGGCCGTCGATTCCTCCAATCCCAAGGCCTCCGATGACGCCGTTCGCCCCAAGCCGGAGCCGGTTGTCTCCGGACCCTTTGGCGGTCACTTGCGGAGCTTGTCCATGGACTCCGATTTCTTCAAGAATCTGGACCTCGGCGGCGATTGCGGGGAGATCGATTCCTTGGGGAGGAAAACTCCGGTGAGTGAACAGCGGCCAGTTCGTCATCGACATAGCCTTTCCATGGATGGGTCTTCGTCGTCGTTTGAAGCCGATTCAACCCTAATTGACGGAGTGAAGAAGGCGATGGACCCGGAGAGACTTGCAGAGCTAGCCCTAATTGACCCCAAAAGAGCTAAAAGGATTCTTGCGAATAGACAATCGGCGGCTCGTTCTAAAGAGAGGAAGATACGGTACACGAACGAGCTGGAGAGGAAGGTTCAGACTCTGCAGTCTGAAGCAACCACTCTGTCGGCGCAGGTGACGATTCTACAGAGAGATACAACTGGATTAACCATCGAAAATAAGGAACTAAAACTTCGTTTACAGGCTATGGAGCAGCAAGCACAGCTTCGGGACGCTCTGAGCGAAGCTCTGAAGGAAGAAGTTCAACGGCTTAGAATAGCAGCAGGACAGGTCCCATCGATAAATGGAAATCCGTTCAATCGACCTCCTCAGTATTCATCATCCCGACCTCCTTTACACCATTTTAGTAGTGCCCATGCACAGCAGGGACAACAGCAGCCACAGCCCATCTTGGCCACAAACCAGCAGCAATCAGATCCCAAATGGACGTCCTCGTCCCAGCTTCTCGGTCGTAATCCCGATGGCCAACCAAAACCTTAG 1056 54.83 MLMERPKFSARKPPQAAAMDIDQMPENPHRGSHHRRSHSDSSFRFPNLDDLLFFDPSELDLSILSSPSPPRAGGAPMAVDSSNPKASDDAVRPKPEPVVSGPFGGHLRSLSMDSDFFKNLDLGGDCGEIDSLGRKTPVSEQRPVRHRHSLSMDGSSSSFEADSTLIDGVKKAMDPERLAELALIDPKRAKRILANRQSAARSKERKIRYTNELERKVQTLQSEATTLSAQVTILQRDTTGLTIENKELKLRLQAMEQQAQLRDALSEALKEEVQRLRIAAGQVPSINGNPFNRPPQYSSSRPPLHHFSSAHAQQGQQQPQPILATNQQQSDPKWTSSSQLLGRNPDGQPKP 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10289053 10292438 + MC11g1159 Mch11g1404 680338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1404 351 FunFam Transcription factor VIP1 186 239 - -
Mch11g1404 351 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 248 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1404 351 SMART brlzneu 183 247 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1404 351 MobiDBLite consensus disorder prediction 285 344 - -
Mch11g1404 351 Coils Coil 210 230 - -
Mch11g1404 351 Coils Coil 238 258 - -
Mch11g1404 351 MobiDBLite consensus disorder prediction 62 103 - -
Mch11g1404 351 MobiDBLite consensus disorder prediction 1 41 - -
Mch11g1404 351 Gene3D - 186 239 - -
Mch11g1404 351 Pfam bZIP transcription factor 187 234 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1404 351 CDD bZIP_plant_RF2 188 237 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1404 351 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 20 330 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch11g1404 351 MobiDBLite consensus disorder prediction 133 158 - -
Mch11g1404 351 MobiDBLite consensus disorder prediction 283 351 - -
Mch11g1404 351 SUPERFAMILY Leucine zipper domain 187 239 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1404 Mch-Chr11:10289053 Mch4g1880 Mch-Chr4:21473069 4.38E-112 dispersed
Mch11g1404 Mch-Chr11:10289053 Mch2g0519 Mch-Chr2:3681985 3.68E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42634 PF00170 bZIP_1 7.50E-08 CL0018 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1404 K20557 - csv:101207973 563.918