Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1416 GCTGCTGTAGCGTGGGAAGCTGGAAAGCCACTTGTGATTGAGGAAGTGGAAGTGGCACCACCACAGGCTAATGAAGTCCGTGTCAAGATCCTCTTCACTGCTCTCTGCCACACTGATGTTTACTTTTGGGAGGCCAAGGGCCAAACGCCTCTGTTTCCTCGCATATTTGGGCATGAAGCTGGAGGAGTTGTGGAGAGTGTGGGGGAGGGAGTGACGGATCTGCAGCCAGGAGACCATGTTCTTCCGGTGTTCACTGGGGAATGCGGGGATTGTCGCCATTGTCAGTCGGAGGAGAGCAATATGTGTGATCTTCTCCGGATCAACACCGACCGCGGTGTCATGATCAATGACGGCAAGACGAGGTTCTCTATTAACGGACAGCCCATCCATCACTTTGTAGGAACCTCCACGTTTAGCGAATACACTGTCGTCCATGTTGGATGTCTAGCCAAGATCAACCCGGCTGCCCCTCTAGACAAAGTTTGTGTTCTTAGCTGCGGAATATCCACAGGCCTTGGAGCTACTTTGAATGTGGCAAAGCCAAAGAAGGGTTCATCTGTTGCAATCTTTGGACTTGGAGCTGTTGGCCTCGCTGCTGCTGAAGGAGCAAGAATTTCCGGGGCATCCAGAATCATTGGTGTTGATCTCAACCCAAGTCGATTTGAAGAAGCAAAGAAATTTGGCTGCAACGAGTTCGTGAATCCAAAGGATCATAACAAACCTGTTCAAGAGGTGATTGCAGAGATGACCGATGGAGGAGTCGATCGGAGCGTCGAATGCACTGGAAGTATCCAGGCCATGATCTCTGCATTCGAATGTGTCCATGATGGGTGGGGTGTTGCTGTGCTCGTCGGAGTGCCAAACAAGGACGACGCATTCAAAACTCATCCGATGAATCTCCTGAACGAGAGGACTCTCAAGGGCACCTTCTTTGGAAACTACAAGCCCCGAACCGACATTCCCGGGGTGGTCGAGAAGTACTTGAACAAGAAGCAAATCTCAAGTCTCCATACGTTATTTGAAGTGATGGCATTGTCAAGCACTGCTGGTAAAGTCATCAAGTGCAGAGCTGCTGTGGCGTGGGAAGCTGGAAAGCCACTGGTGATTGAGGAAGTGGAAGTGGCACCACCACAGGCTAATGAAGTCCGTGTCAAGATCCTCTTCACTGCTCTTTGCCACACCGATGTTTACTTTTGGGAGGCCAAGGGCCAAACACCTCTATTTCCTCGCATATTTGGGCATGAAGCTGGAGGAGTTGTGGAGAGTGTGGCGGAGGGAGTTACCGATCTCGAGTCGGGAGACCACGTTCTTCCGGTGTTCACTGGGGAATGTCGGGAATGTCGCCATTGTCACCGATTCTCCAAAAACGGACGCCCAATTTACCACTTTGTGGGAACCTCAACGTTTAGCGAATACACTGTTGTCCATGTCGGGTGTCTCGCAAAGATCAACCCCACAGCCCCTCTTGACAAGGTCTGTGTTCTCAGCTGCGGAATATCCACAGGCCTTGGCGCCACTTTGAACGTTGCAAAGCCCACCAAGGGCTCCTCTGTTGCTGTTTTTGGACTTGGTGCTGTAGGCCTTGCTGCTGCTGAGGGTGCAAGAATTGCCGGGGCCTCGCGGATCATAGGCGTTGATCTTAATCCAAGTCGATTCGAGGAAGGTAAACCCGCTTTTAAT 1680 51.43 AAVAWEAGKPLVIEEVEVAPPQANEVRVKILFTALCHTDVYFWEAKGQTPLFPRIFGHEAGGVVESVGEGVTDLQPGDHVLPVFTGECGDCRHCQSEESNMCDLLRINTDRGVMINDGKTRFSINGQPIHHFVGTSTFSEYTVVHVGCLAKINPAAPLDKVCVLSCGISTGLGATLNVAKPKKGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLNPSRFEEAKKFGCNEFVNPKDHNKPVQEVIAEMTDGGVDRSVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRTDIPGVVEKYLNKKQISSLHTLFEVMALSSTAGKVIKCRAAVAWEAGKPLVIEEVEVAPPQANEVRVKILFTALCHTDVYFWEAKGQTPLFPRIFGHEAGGVVESVAEGVTDLESGDHVLPVFTGECRECRHCHRFSKNGRPIYHFVGTSTFSEYTVVHVGCLAKINPTAPLDKVCVLSCGISTGLGATLNVAKPTKGSSVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEGKPAFN 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10540305 10553025 - MC11g1167 Mch11g1416 680350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1416 560 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 57 71 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Mch11g1416 560 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 330 IPR036291 -
Mch11g1416 560 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 413 427 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Mch11g1416 560 Gene3D - 347 514 - -
Mch11g1416 560 Gene3D - 515 557 - -
Mch11g1416 560 Pfam Zinc-binding dehydrogenase 194 325 IPR013149 -
Mch11g1416 560 PANTHER ALCOHOL DEHYDROGENASE 1 331 - GO:0004024(PANTHER)|GO:0005829(PANTHER)|GO:0008270(PANTHER)|GO:0046294(PANTHER)|GO:0051903(PANTHER)
Mch11g1416 560 FunFam Alcohol dehydrogenase class-P 171 309 - -
Mch11g1416 560 CDD alcohol_DH_plants 1 355 - -
Mch11g1416 560 Gene3D - 7 331 - -
Mch11g1416 560 Pfam Alcohol dehydrogenase GroES-like domain 23 152 IPR013154 -
Mch11g1416 560 Pfam Alcohol dehydrogenase GroES-like domain 379 483 IPR013154 -
Mch11g1416 560 FunFam alcohol dehydrogenase 1-like isoform X1 7 170 - -
Mch11g1416 560 Gene3D - 171 309 - -
Mch11g1416 560 SUPERFAMILY GroES-like 1 174 IPR011032 -
Mch11g1416 560 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 488 555 IPR036291 -
Mch11g1416 560 SUPERFAMILY GroES-like 348 505 IPR011032 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1416 K18857 - - vvi:100255814 902.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1416 Mch-Chr11:10540305 Mch8g0891 Mch-Chr8:6371426 3.23E-177 dispersed
Mch11g1415 Mch-Chr11:10522351 Mch11g1416 Mch-Chr11:10540305 4.62E-148 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1210 Blo01g01328 . Bda01g00693 . Bpe02g00613 . . . . . Cma01g00998 Cma09g01088 . . . Cpe06g00889 . . . . . . . . . . . . . . . . . . Cone20ag0403 . . . . . . . . . . Bma01g00875 . . Cmo01g01034 Cmo09g01096 . . . Car09g00986 . Cpe02g00897 Bhi09g01488 Tan01g3362 Cmetu01g2220 . . Mch11g1416 . Cla09g00912 Cam09g0964 Cec09g0969 Cco09g0975 . . Cre09g0933 . . Chy03g00637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000873 1 4 2 1 2 2 2 2 2 3 2 2 3 3 4 4 2 6 5 2 4 2 1 3 4 2 2 5 6 6 89