Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1474 CTCGTGTTGCAGTTTGTAGACGTGAGTTATCGGGTGAAGATGGCTGATAAAAATGGTAACACTATCGGACGGGTTTTCGGGTGCGGGGCCGGTGAGACATCGGCCCCAGCCGTCCAGGAACGGAATATTTTACATGGGATCACCGGGATGGTGTCTCCGGGAGAGATTCTGGCCATTCTTGGGCCATCGGGGAGTGGCAAGTCGACCCTCCTCAATGCGCTGGCCGGAAGGTTACAAGGGAACGGTCTGACAGGTTCAGTCCTGGCAAATGGTAGGAAACTGACCAGACCGGTCCTCCGGCGGACCGGATTCGTGACGCAGGATGATGTTCTTTACCCTCACTTAACCGTGAGAGAGACGCTCATATTCTGCTCCCTCCTCCGCCTGCCGTTGTCGTTGTCAAAGCAAGAGAAGATCGCCGTGGCCGAGTCCGTGATCGCCGAGCTCGGTCTCGGCAAATGCCAGGACACAATCATCGGCAACGCGTTCATCCGCGGCGTGTCAGGCGGGGAACGGAAGCGGGTCAGCATCGCCCACGAGATGCTCATAAACCCGAGCCTGCTGATCCTGGACGAGCCGACGTCGGGGTTGGACTCGACCGCGGCGCACCGGCTGGTGAGCACCATGGCGGGGCTGGCCCACAAGGGCAAGACCATCGTGACCTCAATCCACCAGCCGTCGAGCCGGGTATACCAGACCTTCGACTCGGTGCTGCTTTTATCGGAAGGAAGGTGTTTGTATTATGGCAAAGGAAGTGAAGCAATGAGCTATTTTGAGTCCATTGGATTCACCCCCTCTTTTCCTATGAACCCTGCTGATTTCCTCCTCGATCTCGCCAACGGTGTGTACCAAGTTGACAATACAAGTGAAGTGGACAAACCCAACATGAAGCAAACCCTAATTTCTTCTTACAACACTCTGTTGGCTCCAAGGGTAAAAACAGCTTGCATGGAAAGCACTTGTACAAAGGAAAGGGAAACAATGCTGCTGTCTGGAGAAGGGAAACACAGCAGCAAAACCAGTCTCCTCTCATGGTGCAACCAACTCACCATCTTGCTCCAGAGAAACCTCAAAGAACGAAAACACGAAACCTTCAACGCTCTCCGAGTTTTCCAAGTCATCACCGCGGCGATGCTCGCGGGACTGATGTGGTGGCACTCCGATTACCGAGACGTTCAAGACCGCCTCGGCCTCCTCTTCTTCATCTCCATCTTCTGGGGAGTTTTCCCCTCGTTTAACGCCGTCTTCGCCTTCCCCCAAGAGCGAGCGATCTTCCTCAAGGAGCGAGCCTCCGGCATGTACACGTTGTCGTCGTATTTCATGGCGCGAATCGTCGGAGACCTGCCTATGGAGCTCATTCTTCCCACCATTTTCCTCACGGTGGCGTATTGGATGGCGGAGCTGAAGCCAGAGCTCGGTGCCTTTCTCCTGACGTTGTTGGTGCTCCTCGGCTACGTGCTCGTCTCGCAGGGGCTCGGCCTCGCCTTAGGGGCAGCGATCATGGATGCCAAACAAGCGTCCACCATCGTGACCGTGGCGATGTTGGCGTTTGTGTTGACAGGAGGGTTTTATGTACACAAAGTACCATCCTGCATGGCTTGGATTAAGTACATTTCGACGACGTTTTACAGTTACAGGCTCTTCATCAACGTACAATATGGTAGCGGAGAGAAGATATGGTCGTTGCTCGGCTGCTCGAGCCACGGAGGTGCGAGGGCGAGCTGCAGATTTGTGGAAGAAGATGTGGCAGGGCAAATAAGCCCTGCATACAGCATTGGGGCTTTATTGTTTATGTTTGTGGGTTATAGGTTATTGGCATATTTGGCTCTGAGACGCATCAAATAG 1845 54.2 LVLQFVDVSYRVKMADKNGNTIGRVFGCGAGETSAPAVQERNILHGITGMVSPGEILAILGPSGSGKSTLLNALAGRLQGNGLTGSVLANGRKLTRPVLRRTGFVTQDDVLYPHLTVRETLIFCSLLRLPLSLSKQEKIAVAESVIAELGLGKCQDTIIGNAFIRGVSGGERKRVSIAHEMLINPSLLILDEPTSGLDSTAAHRLVSTMAGLAHKGKTIVTSIHQPSSRVYQTFDSVLLLSEGRCLYYGKGSEAMSYFESIGFTPSFPMNPADFLLDLANGVYQVDNTSEVDKPNMKQTLISSYNTLLAPRVKTACMESTCTKERETMLLSGEGKHSSKTSLLSWCNQLTILLQRNLKERKHETFNALRVFQVITAAMLAGLMWWHSDYRDVQDRLGLLFFISIFWGVFPSFNAVFAFPQERAIFLKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVAYWMAELKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKQASTIVTVAMLAFVLTGGFYVHKVPSCMAWIKYISTTFYSYRLFINVQYGSGEKIWSLLGCSSHGGARASCRFVEEDVAGQISPAYSIGALLFMFVGYRLLAYLALRRIK 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11480596 11487660 - MC11g1195 Mch11g1474 680408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1474 614 CDD ABCG_EPDR 33 249 - -
Mch11g1474 614 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 3 607 IPR050352 GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Mch11g1474 614 Pfam ABC-2 type transporter 348 553 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Mch11g1474 614 FunFam ABC transporter G family member 22 32 261 - -
Mch11g1474 614 Gene3D - 34 261 IPR027417 -
Mch11g1474 614 SMART AAA_5 53 244 IPR003593 GO:0016887(InterPro)
Mch11g1474 614 Pfam ABC transporter 44 195 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch11g1474 614 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 3 267 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch11g1474 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 262 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1474 K05681 - - csv:101214873 1025.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1474 Mch-Chr11:11480596 Mch9g2006 Mch-Chr9:21373488 1.03E-173 dispersed
Mch11g1474 Mch-Chr11:11480596 Mch4g1174 Mch-Chr4:12612885 2.18E-199 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1240 . . . . . . . . . . . Cma09g01112 . . . . Cpe13g00716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01118 . . . . . Cpe02g00910 Bhi09g01524 . . . . Mch11g1474 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009054 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34