Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1530 AGTTTGTTCATCATGGCGGACGTTATGCTGATGAAAGAGATTGAGGACACGGCTGGTCGGCTCGGGATAGATCTTTTTCAAGTTGATTTCGACTCCATTCGTCTTCCTCCTGACAACGATTTTGGGATCATTAGTGATGATGAAGAGGTTCTACAAGAGGAGAGTCTGGAGTTTGATTCTGGATTCGGAAATGTTATTGTTGTTGACAATCTTCCGGTTGTTTCTTCGGAGAAGTTCGAGAAACTTCAAGGTGTTGTTCGTAAGATTTTTGGTCAGGTTGGAGTTATAAAAGATGATGGTTTATGGATGCCCGTTGATCCTACGACACAAAAAACTTTAGGTTATTGCTTTATCGAGTATGGTACCCCACAGGAAGCCGAGCTTGCGAAAGAGAAGACCGATGGGTACAAGTTGGATAGAGCCCATATTTTTGCTGTTAACATGTTTGAGGACTTCCACAGATTTATGAAAGTTCCAGATGAGTGGGCTCCTCCTGAAATTAGCCCATATACTCCTGGGGAAAATCTTCAGCAATGGCTTACTGATGACAAAGCACGTGATCAGTTTGTTATTCGTTCGGGTTCTGACACTGAGGTCTTCTGGAATGACGCTAGACATTTGAAGCCCGAGCCTGTTTACAAGCGTTCTTTCTGGACTGAGAGTTTTGTGCAGTGGTCCCCCTTGGGGACTTACCTAGCGACAATTCACCGACAAGGTGCTGCAGTTTGGGGTGGAGCAGGTACCTTTAACCGTCTGATGCGCTTTGCTCATCAACAGGTGAAGTTAATTGATTTTTCTCCTGGTGAGAAATATCTGGTGACTTACTGCAGTCATGAGCCCAGCAATCCTCGTGATGCAAATAGGATCGTGATAAATATTTTTGATGCAAGAACAGGAAAAGTTATGAGAGATTTCAAAGGAAGTCCAGACGATTTTGCTATTGGTGGAACCGGTGGTGGTGTTGCAGGCGTGTCTTGGCCTATTTTTAGGTGGGGTGGCGGGAAAGATGACAAGTACTTTGCCAGAATTGGTAAAAATGTGGTCTCTGTCTATGAAACAGAGACTTTCTCACTAATTGACAAAAGATCTTTGAAGGTTGAAAACGTAACGGATTTCTGCTGGTCTCCTACAGAACCAATTATTTCACTCTTCGTTCCTGAGCTTGGTGGTGGGAACCAACCGGCTAGGGTGAGTCTTGTTCAAATCCCTAGCAAGGTAGAGTTGAGACAGAAAAATCTTTTCAGCGTTAGTGATTGCCAAATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGACAGGTATACAAAGACGAAGAAGAGCACATACACAGGTTTTGAGCTTTTTCGCATTAAAGAGCGGGATATCCCTATTGAAGTGCTGGAGCTTGAAAATAAGAATGACAAGATCATTGACTTTGCCTGGGAGCCGAAGGGGCACAGGTTTGCAGTTATTCATGGCGACAACCCCAGGCCAGACGTAAGCATTTACACGATGCGCACCGCTCAAAACAGTGGACGGGTATCAAAACTTACGACTCTGAAAGGCAAGCAGGCCAATTCTCTTTTCTGGTCACCTGCCGGACGCTTCATCATACTTGCTGGACTGAAAGGTCTGAACGGACAGTTAGAATTTTTCAATGTTGATGAGCTGGAGACGATGGCAACCGCTGAGCATTTCATGGCTACCGACATTGAATGGGATCCTACTGGAAGGTATGTTGCTACTGCAGTAACTTCTGTTCACGAGATGGAAAATGGCTTCAACGTCTGGTCATTTAATGGAAAGCTTCTCTACAGAATATTGAAAGACCATTTCTTTCAGTTTGCGTGGCGCCCGAGACCACCAACCTTCTTGAGTCCCGAGAAAGAGGAAGAGATATCCAAGAATCTGAAGAAGTACAGCAAGAAGTACGAGGCTGAAGATCAGGACGTTTCTATGCTGCTCAGCGAGCAGGATCGCCAGAAACGTAGAAGGTTGCAGGAGGACTGGGACAAGTGGTTGAATGAATGGAAGATACTGCACGAAGAAGAGAAGATGTTCCGGCAGAAACTGCGGGATGGCGAAGCCAGTGATGAGGAAGAGGAGTACGAAGCAAAGGAGGTTGAAGTAGAAGAGATTTTGGATGTGACAGAGGAGGTTTTATCGTTTGATTTTGGACAGGAATGA 2175 45.01 SLFIMADVMLMKEIEDTAGRLGIDLFQVDFDSIRLPPDNDFGIISDDEEVLQEESLEFDSGFGNVIVVDNLPVVSSEKFEKLQGVVRKIFGQVGVIKDDGLWMPVDPTTQKTLGYCFIEYGTPQEAELAKEKTDGYKLDRAHIFAVNMFEDFHRFMKVPDEWAPPEISPYTPGENLQQWLTDDKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRSFWTESFVQWSPLGTYLATIHRQGAAVWGGAGTFNRLMRFAHQQVKLIDFSPGEKYLVTYCSHEPSNPRDANRIVINIFDARTGKVMRDFKGSPDDFAIGGTGGGVAGVSWPIFRWGGGKDDKYFARIGKNVVSVYETETFSLIDKRSLKVENVTDFCWSPTEPIISLFVPELGGGNQPARVSLVQIPSKVELRQKNLFSVSDCQMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIDFAWEPKGHRFAVIHGDNPRPDVSIYTMRTAQNSGRVSKLTTLKGKQANSLFWSPAGRFIILAGLKGLNGQLEFFNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNVWSFNGKLLYRILKDHFFQFAWRPRPPTFLSPEKEEEISKNLKKYSKKYEAEDQDVSMLLSEQDRQKRRRLQEDWDKWLNEWKILHEEEKMFRQKLRDGEASDEEEEYEAKEVEVEEILDVTEEVLSFDFGQE 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12510817 12515301 - MC11g1232 Mch11g1530 680464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1530 724 SUPERFAMILY RNA-binding domain, RBD 58 142 IPR035979 GO:0003676(InterPro)
Mch11g1530 724 PIRSF Transl_init_eIF3b 12 718 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Mch11g1530 724 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 151 IPR000504 GO:0003723(InterPro)
Mch11g1530 724 Pfam RNA recognition motif 86 140 IPR000504 GO:0003723(InterPro)
Mch11g1530 724 Gene3D - 181 388 IPR015943 GO:0005515(InterPro)
Mch11g1530 724 CDD RRM_eIF3B 63 147 IPR034363 -
Mch11g1530 724 Gene3D - 59 158 IPR012677 -
Mch11g1530 724 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 33 713 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(InterPro)|GO:0005852(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)|GO:0031369(InterPro)
Mch11g1530 724 Gene3D - 419 637 IPR015943 GO:0005515(InterPro)
Mch11g1530 724 Coils Coil 692 712 - -
Mch11g1530 724 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 64 718 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Mch11g1530 724 FunFam Eukaryotic translation initiation factor 3 subunit B 416 631 - -
Mch11g1530 724 FunFam Eukaryotic translation initiation factor 3 subunit B 185 387 - -
Mch11g1530 724 Pfam Eukaryotic translation initiation factor eIF2A 411 611 IPR013979 -
Mch11g1530 724 SMART rrm1_1 65 146 IPR000504 GO:0003723(InterPro)
Mch11g1530 724 FunFam Eukaryotic translation initiation factor 3 subunit B 59 158 - -
Mch11g1530 724 SUPERFAMILY DPP6 N-terminal domain-like 222 607 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1530 Mch-Chr11:12510817 Mch6g2520 Mch-Chr6:27122232 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1530 K03253 - csv:101213144 1353.19