Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1547 ATGGATCCTGAAGATAGTTTGTGTAGCTCTGAAGTTTGGACAAAATCTTCATCTTTCTCTAATATTAGTACCCAGCAACCTGCACAGAAATGGGTAGATACTTCCATTTTAGACTATGCTATGGATCAACCTTTCCAAGAATTCGATGAACCGACCGAGTCGAAGACTTCTCTAACCTGTAACCCAACTCAGCAGATTGATATCCCGGATAAAGATAGTGATCAGATAAATGCAGCACTTCTAGCCAGTAAAATTCAAGATTGGGACCCGAGAGTGATGCTAAATAATCTTTCTTTCCTTGAGCAGAAGATTCATCAGCTTCAGGAACTCGTGCACTTGATCGTTGGCCGGAGGAGTCAAGCTTTGGCGAGGCCCGATGAACTAGTGGTTCAGCAACAGCAGCTGATAACAGCAGATCTAACTTCAATTATTGTTCAGCTAATCTCAACAGCAGGGAGTCTTCTGCCTTCAGTAAAGCATAACTTGTCTGCAGCTGTTCCTCCAGTTGGGCAGCTGGAGCAGCTCGACAGGGTTCTTTTCGCGTCCGGAGCCGGGTCTAGTGGTGTTGTTCAGTCACAACATGATGATGGAACTAAATTCCCTGAGCTCCCAACCCAAATCGACGAAAGTAGCAAGTGCGGAAAGGAACAGAACATGACCATGGAAGAGCATGAATTGAAGGATGAAGAAGATGTGGATGAAAGCGAGAACCTCCCGCCCGGTTCGTACGAAATACTACAGCTAGAGAAAGAAGAGATCCTTGCACCACACACCCACTTTTGCGCAATTTGCGGAAAAGGGTTCAAGAGGGATGCAAATTTACGAATGCACATGAGGGGCCACGGCGACGAGTACAAAACTGCAGCTGCTCTTGCAAAGCCAAACAAAGAACCGAGTACCGAAACTGTGCTGATCAAGAGGTATTCCTGCCCCTTCACCGGGTGCAAACGGAACAAGGATCATAAGAAGTTCCAGCCTCTGAAAACTATTCTGTGTGTTAAAAACCATTACAAGAGAACTCACTGTGACAAAAGCTTCACTTGCAGCAAATGCAACTCCAAGAAATTCTCAGTAATTGCTGATCTCAAAACACATGAGAAGCACTGTGGGAAAGATAAATGGCTCTGTTCTTGTGGGACAACTTTCTCTAGGAAAGACAAGCTTTTTGGACATATTGCTCTCTTCCAAGGCCACACTCCTGCAATTCCGCTCGACGAGTCAAAGGGAACGGTCGGGCCGTGCGATCGAGGAGAACGCTACGAAGCGATGAATAAGCACGGGAGTATAAATTTCAGTTTTGGGTCGGGTGGAAGCTCAGTTGAAAACATTGCAGATGCAAAAGGTGTTGATGATCCTCTTGGTTATTTCTCGCCTCTGAACTTTGATTCGTGTAATTTCGGTGGCTTTCACGAGTTTCCTCGACCGCCATTTGAGAACACAGAGAATGCGTTTTCGTTTCTTATCCCGGCATCTAGCAATTACAACCAAAAATCTGGTGCAGAGTCGAGCTCT 1512 45.7 MDPEDSLCSSEVWTKSSSFSNISTQQPAQKWVDTSILDYAMDQPFQEFDEPTESKTSLTCNPTQQIDIPDKDSDQINAALLASKIQDWDPRVMLNNLSFLEQKIHQLQELVHLIVGRRSQALARPDELVVQQQQLITADLTSIIVQLISTAGSLLPSVKHNLSAAVPPVGQLEQLDRVLFASGAGSSGVVQSQHDDGTKFPELPTQIDESSKCGKEQNMTMEEHELKDEEDVDESENLPPGSYEILQLEKEEILAPHTHFCAICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKEPSTETVLIKRYSCPFTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSFTCSKCNSKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKGTVGPCDRGERYEAMNKHGSINFSFGSGGSSVENIADAKGVDDPLGYFSPLNFDSCNFGGFHEFPRPPFENTENAFSFLIPASSNYNQKSGAESSS 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12887380 12888891 + MC11g1244 Mch11g1547 680481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1547 504 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Mch11g1547 504 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 64 487 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Mch11g1547 504 Gene3D Classic Zinc Finger 243 311 - -
Mch11g1547 504 MobiDBLite consensus disorder prediction 9 28 - -
Mch11g1547 504 SMART c2h2final6 308 341 IPR013087 -
Mch11g1547 504 SMART c2h2final6 346 368 IPR013087 -
Mch11g1547 504 SMART c2h2final6 259 281 IPR013087 -
Mch11g1547 504 MobiDBLite consensus disorder prediction 189 240 - -
Mch11g1547 504 MobiDBLite consensus disorder prediction 1 28 - -
Mch11g1547 504 SUPERFAMILY beta-beta-alpha zinc fingers 257 285 IPR036236 -
Mch11g1547 504 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 286 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1547 Mch-Chr11:12887380 Mch3g0609 Mch-Chr3:10522440 1.07E-76 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42638 None None None None Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1547 - - - 0.0