Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1552 ATGGTAAAGCAAACGCACTCATTGACTCAAATTCTTCACGAAATCCAATTGATCGGAGGCAGAATCACAGCCAGCGCAAAATTCTGTTCATCAATCTCTCATCCTTCCGCCTTCCAGATCAAACCGCTGGGGAATCTCACTTCCACGCGCTCCCGCTCCCACCACCGCCGGCCGCCCATGGCCACGGCCGCCGCCGCCGCCTCCGCCTCCGCTGCGGGTAACCCTTCACCCACCTCCTCTAACCCTTTCGTTTTCTCCCCCGATTCTCCCCCAACACTCGCTCTCACACCCGATCAGGTTAAGTTTTGTTCCGAAGCTCTTGATGTGTTCAGAGAGAAGCTCCAGACGCCTCATGTGATCAACCAGGAGTTCGCCCGGTTGCAGGCCAAGAGAATAACTGCATATGATATGAAGAGCAAGTGCTCTGTGGCTCTTGACAACGTCAACATAAACAAAAATCGTTACATGGATGTACTACCATTTGATGAGACTAGAGTTGTACTCGACTCATGTAAGGATTACAGACCTGCTGCAAGGGGTTATATCAATGCAAGCTTTATCTCGACTTCCTCCTCAAAAAGCATTTCTCAATTTGTTGCCACACAAGGTCCATTACCACACACTTATGAAGATTTCTGGGAGATGGTGTTTCAGTATAAATGCCCTGCAATTTTGATGCTTACTCGGCTAGTTGATAATTACAAGATGGTAAAGTGTGGAGATTATTTTCAGGCTGAAGATGGTCCTAGAGATTTTGGTAATATATATGTTGTCTCTCAATGGATAAAAACTTCCAACTCCTCTCTTATTCTGCGCCATTTGGAGGTGAACCGTAAAGAGTTGGAAGAATCTGTGGCTGTTTTGCATATTCAGTACGCAGAATGGCCTGACCATGGAGTTCCTACTGACACACTTGCTGTTCGTGAAATGTTAAAGAGGCTGTATCATTTACCTCCCGATCTCGGCCCAATAGTGGTGCACTGCAGTGCAGGTATTGGGAGAACGGGAACATATTGTGCAATTCATAACACAATTCAGAGAATCCTTGCTGGAGACATGTCTGCTCTAGATCTTGTCAGTACCATTTCCACATTTAGGTCCCAGCGAATTGGAATGGTCCAAACACTG 1128 46.81 MVKQTHSLTQILHEIQLIGGRITASAKFCSSISHPSAFQIKPLGNLTSTRSRSHHRRPPMATAAAAASASAAGNPSPTSSNPFVFSPDSPPTLALTPDQVKFCSEALDVFREKLQTPHVINQEFARLQAKRITAYDMKSKCSVALDNVNINKNRYMDVLPFDETRVVLDSCKDYRPAARGYINASFISTSSSKSISQFVATQGPLPHTYEDFWEMVFQYKCPAILMLTRLVDNYKMVKCGDYFQAEDGPRDFGNIYVVSQWIKTSNSSLILRHLEVNRKELEESVAVLHIQYAEWPDHGVPTDTLAVREMLKRLYHLPPDLGPIVVHCSAGIGRTGTYCAIHNTIQRILAGDMSALDLVSTISTFRSQRIGMVQTL 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13007824 13015103 - MC11g1248 Mch11g1552 680486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1552 376 Coils Coil 271 291 - -
Mch11g1552 376 MobiDBLite consensus disorder prediction 43 88 - -
Mch11g1552 376 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 57 375 IPR050348 GO:0004725(PANTHER)
Mch11g1552 376 Gene3D Protein tyrosine phosphatase superfamily 94 376 IPR029021 -
Mch11g1552 376 Pfam Protein-tyrosine phosphatase 149 375 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Mch11g1552 376 PRINTS Protein tyrosine phosphatase signature 180 187 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Mch11g1552 376 PRINTS Protein tyrosine phosphatase signature 198 218 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Mch11g1552 376 PRINTS Protein tyrosine phosphatase signature 285 302 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Mch11g1552 376 PRINTS Protein tyrosine phosphatase signature 372 376 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Mch11g1552 376 PRINTS Protein tyrosine phosphatase signature 356 371 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Mch11g1552 376 PRINTS Protein tyrosine phosphatase signature 323 341 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Mch11g1552 376 MobiDBLite consensus disorder prediction 69 87 - -
Mch11g1552 376 ProSiteProfiles PTP type protein phosphatase domain profile. 120 376 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Mch11g1552 376 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 109 376 IPR029021 -
Mch11g1552 376 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 305 376 IPR000387 GO:0016311(InterPro)
Mch11g1552 376 SMART ptp_7 286 376 IPR003595 -
Mch11g1552 376 FunFam Tyrosine-protein phosphatase non-receptor type 12 97 376 - -
Mch11g1552 376 SMART PTPc_3 119 376 IPR000242 GO:0004725(InterPro)|GO:0006470(InterPro)
Mch11g1552 376 ProSitePatterns Tyrosine specific protein phosphatases active site. 326 336 IPR016130 GO:0016311(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1552 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch11g1552 . 86 376 Protein tyrosine phosphatase (PTP) family AT1G71860 66.2 1.7e-111 399.4
Mch1g0184 . 21 920 Protein tyrosine phosphatase (PTP) family AT5G23720 64.5 0.0e+00 1077.4
Mch4g0086 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 1.2e-71 266.2
Mch9g1831 . 96 373 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 5.3e-114 407.5
Mch9g1401 . 20 277 Protein tyrosine phosphatase (PTP) family AT3G10940 66.4 2.7e-102 368.6
Mch8g1510 . 254 702 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 1.8e-201 698.7
Mch2g0685 . 9 231 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 9.5e-78 287.0
Mch4g0093 . 10 243 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 9.8e-75 276.9
Mch8g3193 . 17 264 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.2e-80 297.0
Mch8g3193 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 8.2e-47 183.7
Mch2g0685 . 43 230 Protein tyrosine phosphatase (PTP) family AT4G03960 68.6 2.1e-72 268.9
Mch4g0093 . 43 242 Protein tyrosine phosphatase (PTP) family AT4G03960 62.5 4.0e-68 254.6
Mch6g1423 . 5 185 Protein tyrosine phosphatase (PTP) family AT4G03960 53.6 4.3e-54 208.0
Mch6g1423 . 7 216 Protein tyrosine phosphatase (PTP) family AT3G02800 67.0 4.0e-79 291.2
Mch2g0685 . 40 224 Protein tyrosine phosphatase (PTP) family AT3G02800 55.1 2.2e-53 205.7
Mch9g1591 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 66.7 1.8e-63 241.1
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g0722 . 38 619 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.3e-221 763.8
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G19420 61.8 1.7e-197 686.0
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch10g1638 . 10 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.9 9.2e-112 400.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008867 1 2 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 33