Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1644 ATGGACGGCCCCCCTGCGGGCGATTTCTGTTCAATCTGCCATGGAAGTTTCAACATACCTTGCCAAGCAAATTGCTCGCACTGGTTCTGCGGAAGTTGTATAATGCTTGTTTGGGATCATGGATCATCACTCCAGCCATGTAAATGCCCCCTATGTCGCCGACAGATTACTTTATTGGTTCCTTCTGAGGCTTCAGCAAGGCAGCAAAGTAACCCTGAGGTTGCTCGAATTCTTAATAATATAAGGACTTATAACCATCATTTTGGTGACAACTCGGCTGGTTTAATTCAGCGAATGCAAGACCTTCCTTTTCTTCTACGGAGGTTGCTTCGGGAACTCCTCGATCCCCAGAGATCTCTTCCTCTTGTCATTAGAGCACGCGTTTACATTGCAATGGTACTGAGCGTAGTCTACACTCTGAGTCCCATCGATATCATACCAGAAGCAATGCTAGGAGTATTTGGACTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTATATTGCTGCTATGTATCGATCGGTACTCTATTATCGCCATGGAGGATCTTGA 558 45.16 MDGPPAGDFCSICHGSFNIPCQANCSHWFCGSCIMLVWDHGSSLQPCKCPLCRRQITLLVPSEASARQQSNPEVARILNNIRTYNHHFGDNSAGLIQRMQDLPFLLRRLLRELLDPQRSLPLVIRARVYIAMVLSVVYTLSPIDIIPEAMLGVFGLMDDIFILLICFLYIAAMYRSVLYYRHGGS 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15066921 15090300 + MC11g_new0357 Mch11g1644 680578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1644 185 PANTHER UNCHARACTERIZED 3 182 IPR038896 GO:0061630(InterPro)
Mch11g1644 185 CDD RING-HC_RNF113A_B 10 61 - -
Mch11g1644 185 SUPERFAMILY RING/U-box 9 59 - -
Mch11g1644 185 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Mch11g1644 185 ProSiteProfiles Zinc finger RING-type profile. 10 53 IPR001841 -
Mch11g1644 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 102 IPR013083 -
Mch11g1644 185 SMART ring_2 10 52 IPR001841 -
Mch11g1644 185 Pfam Protein of unknown function (DUF1232) 130 164 IPR010652 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1644 K15707 - - rcu:8281372 296.589
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2501 . 81 567 C3H Transcription Factor Family AT2G31510 77.9 8.0e-235 809.7
Mch7g0178 . 143 654 C3H Transcription Factor Family AT2G31510 72.9 3.7e-224 774.2
Mch8g2501 . 50 541 C3H Transcription Factor Family AT2G31770 56.9 1.5e-170 596.3
Mch7g0178 . 126 613 C3H Transcription Factor Family AT2G31770 56.7 6.7e-166 580.9
Mch8g2501 . 64 526 C3H Transcription Factor Family AT2G31760 59.1 1.9e-170 595.9
Mch7g0178 . 126 613 C3H Transcription Factor Family AT2G31760 56.1 1.4e-165 579.7
Mch1g0982 . 7 169 C3H Transcription Factor Family AT5G06490 51.9 9.6e-46 180.3
Mch1g0982 . 7 169 C3H Transcription Factor Family AT5G06490 51.9 9.6e-46 180.3
Mch4g2385 . 1 223 C3H Transcription Factor Family AT3G02290 60.6 1.1e-72 270.0
Mch6g0759 . 1 304 C3H Transcription Factor Family AT1G11020 75.4 5.8e-133 470.7
Mch8g1314 . 59 218 C3H Transcription Factor Family AT1G50440 73.8 6.8e-67 250.8
Mch1g0085 . 8 369 C3H Transcription Factor Family AT5G08750 61.8 8.5e-125 443.7
Mch11g1644 . 31 186 C3H Transcription Factor Family AT1G22510 69.9 7.0e-60 227.3
Mch4g2385 . 1 223 C3H Transcription Factor Family AT5G38895 54.5 1.2e-67 253.8
Mch8g0744 . 16 227 C3H Transcription Factor Family AT1G19310 67.9 1.2e-81 299.7
Mch1g1147 . 16 225 C3H Transcription Factor Family AT1G19310 59.4 2.1e-68 255.8
Mch11g1644 . 35 186 C3H Transcription Factor Family AT1G72175 70.4 3.2e-57 218.0
Mch6g2258 . 1 203 C3H Transcription Factor Family AT5G48655 50.5 4.1e-44 174.9
Mch1g1451 . 7 323 C3H Transcription Factor Family AT2G22120 81.2 2.5e-156 548.5
Mch8g0168 . 27 156 C3H Transcription Factor Family AT5G07040 59.2 8.3e-40 160.2
Mch6g0359 . 1 389 C3H Transcription Factor Family AT1G18470 76.1 3.1e-179 624.8
Mch4g1241 . 11 389 C3H Transcription Factor Family AT1G18470 64.9 9.6e-144 506.9
Mch4g1372 . 50 274 C3H Transcription Factor Family AT1G68200 51.9 4.9e-49 191.8
Mch8g2501 . 50 541 C3H Transcription Factor Family AT2G31770 56.9 1.5e-170 596.3
Mch7g0178 . 126 613 C3H Transcription Factor Family AT2G31770 56.7 6.7e-166 580.9
Mch8g2501 . 64 526 C3H Transcription Factor Family AT2G31760 59.1 1.9e-170 595.9
Mch7g0178 . 126 613 C3H Transcription Factor Family AT2G31760 56.1 1.4e-165 579.7
Mch11g1300 . 46 276 C3H Transcription Factor Family AT5G55970 73.7 4.9e-100 361.3
Mch11g1301 . 45 289 C3H Transcription Factor Family AT5G55970 63.1 3.5e-90 328.6
Mch1g0085 . 8 369 C3H Transcription Factor Family AT5G63780 56.8 3.5e-118 421.8
Mch5g1449 . 1 421 C3H Transcription Factor Family AT3G58030 52.9 3.1e-105 379.0
Mch11g1300 . 35 345 C3H Transcription Factor Family AT4G26580 65.9 4.6e-117 417.9
Mch11g1301 . 38 335 C3H Transcription Factor Family AT4G26580 60.7 7.9e-109 390.6
Mch11g1733 . 22 155 C3H Transcription Factor Family AT4G10150 55.4 8.5e-41 164.1
Mch1g0595 . 11 477 C3H Transcription Factor Family AT5G01960 70.4 1.1e-171 599.7
Mch9g1370 . 1 495 C3H Transcription Factor Family AT5G01960 57.8 4.5e-149 524.6
Mch2g0458 . 1 152 C3H Transcription Factor Family AT2G04240 58.0 7.4e-44 173.7
Mch4g0358 . 1 149 C3H Transcription Factor Family AT2G04240 58.4 2.5e-39 158.7
Mch2g0178 . 15 244 C3H Transcription Factor Family AT5G19430 56.4 4.1e-65 245.0
Mch10g0936 . 73 512 C3H Transcription Factor Family AT5G45290 50.7 2.1e-95 346.7
Mch2g0178 . 40 244 C3H Transcription Factor Family AT5G12310 58.4 3.7e-58 221.9
Mch6g0468 . 22 338 C3H Transcription Factor Family AT5G05810 52.4 6.3e-76 281.6
Mch4g2531 . 22 202 C3H Transcription Factor Family AT5G05830 59.4 1.9e-57 219.2
Mch5g1893 . 70 231 C3H Transcription Factor Family AT5G05830 61.1 1.5e-54 209.5
Mch1g0649 . 1 131 C3H Transcription Factor Family AT5G05830 65.4 2.9e-45 178.7
Mch4g2385 . 1 223 C3H Transcription Factor Family AT5G15790 57.6 3.5e-71 265.0
Mch4g2561 . 1 272 C3H Transcription Factor Family AT3G55530 78.8 4.3e-113 404.4
Mch9g0837 . 1 273 C3H Transcription Factor Family AT1G63900 76.6 3.5e-118 421.4
Mch5g0259 . 17 401 C3H Transcription Factor Family AT2G44580 56.2 1.4e-125 446.4
Mch8g0744 . 20 150 C3H Transcription Factor Family AT1G74990 57.6 6.5e-41 163.7
Mch11g0470 . 3 313 C3H Transcription Factor Family AT5G20910 65.0 2.4e-112 402.1
Mch1g1147 . 25 227 C3H Transcription Factor Family AT2G23780 63.7 2.5e-74 275.4
Mch8g0744 . 6 229 C3H Transcription Factor Family AT2G23780 57.0 1.1e-69 260.0
Mch5g1298 . 1 313 C3H Transcription Factor Family AT3G10810 54.9 3.2e-82 302.8
Mch1g0480 . 102 483 C3H Transcription Factor Family AT3G10810 51.9 2.3e-72 270.0
Mch6g2410 . 1 166 C3H Transcription Factor Family AT1G63840 55.2 1.8e-45 179.1
Mch7g0647 . 1 149 C3H Transcription Factor Family AT1G63840 55.8 1.5e-44 176.0
Mch4g1448 . 13 340 C3H Transcription Factor Family AT1G68070 64.8 1.7e-114 409.5
Mch8g0405 . 1 407 C3H Transcription Factor Family AT1G80400 53.3 2.2e-113 406.0
Mch8g2501 . 81 567 C3H Transcription Factor Family AT2G31510 77.9 8.0e-235 809.7
Mch7g0178 . 143 654 C3H Transcription Factor Family AT2G31510 72.9 3.7e-224 774.2
Mch1g0982 . 10 168 C3H Transcription Factor Family AT2G35910 63.4 2.9e-51 198.7
Mch5g1527 . 6 161 C3H Transcription Factor Family AT2G35910 51.9 4.0e-45 178.3
Mch1g0314 . 1 316 C3H Transcription Factor Family AT2G41980 77.5 7.4e-146 513.5
Mch10g0060 . 61 318 C3H Transcription Factor Family AT2G41980 80.6 1.4e-128 456.1
Mch10g0061 . 61 318 C3H Transcription Factor Family AT2G41980 80.2 6.9e-128 453.8
Mch2g0077 . 26 323 C3H Transcription Factor Family AT2G41980 71.0 9.1e-128 453.4
Mch9g1742 . 48 306 C3H Transcription Factor Family AT2G41980 78.8 5.0e-126 447.6
Mch4g1590 . 48 306 C3H Transcription Factor Family AT2G41980 78.8 8.5e-126 446.8
Mch5g0635 . 100 374 C3H Transcription Factor Family AT3G06140 62.7 2.0e-94 342.8
Mch5g1754 . 36 333 C3H Transcription Factor Family AT3G09770 57.0 4.9e-82 301.6
Mch8g1347 . 148 690 C3H Transcription Factor Family AT3G26730 55.2 3.3e-160 562.4
Mch6g0156 . 58 352 C3H Transcription Factor Family AT3G47990 71.1 9.3e-125 443.4
Mch3g1454 . 296 569 C3H Transcription Factor Family AT3G47990 69.6 1.9e-114 409.1
Mch6g2186 . 7 188 C3H Transcription Factor Family AT5G17600 56.1 5.6e-52 201.8
Mch2g1145 . 34 401 C3H Transcription Factor Family AT3G18930 54.2 1.3e-84 310.5
Mch10g1791 . 20 235 C3H Transcription Factor Family AT5G66070 74.5 3.8e-75 278.1
Mch5g1804 . 5 271 C3H Transcription Factor Family AT5G02750 54.4 1.0e-69 260.4
Mch6g0359 . 5 468 C3H Transcription Factor Family AT1G73950 72.2 3.1e-198 688.0
Mch4g1241 . 12 467 C3H Transcription Factor Family AT1G73950 59.9 6.8e-161 563.9
Mch11g1733 . 25 166 C3H Transcription Factor Family AT1G33480 59.2 3.5e-43 172.2
Mch4g1448 . 2 241 C3H Transcription Factor Family AT2G01735 57.7 2.7e-69 258.8
Mch10g1468 . 60 269 C3H Transcription Factor Family AT2G01735 53.3 8.8e-52 200.7