Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1674 ATGGACACCAAAGGCCGACTCATTGCGGGTTCTCACAACAGAAATGAGTTTGTTCTCATCAATGCCGATGAGGTTGCAAGAGTGACATCTGTGAAAGAGTTGAGTGGGCAAATATGCCAGATCTGTGGGGATGAGCTTGAAATCACTGTAGATGGAGAGCCATTTGTTGCGTGTAACGAATGTGCCTTTCCAGTTTGCAGACCTTGCTATGAGTATGAAAGAAGAGAGGGCAATCAGGCTTGCCCTCAGTGCAAAACCAGATACAAACGTCTCAAAGGTAGTCCTCGGGTCGAAGGCGATGAAGAGGAAGATGATACTGACGATCTGGAGAATGAGTTTGACATTGCAAACAAGGATCCCAACAGTGTATCTGAGGCAATGCTCTATCCCCACCTCGCCGTAGGGCGTGGTTCTCATGCTAATGGCTCTGGAAATATGGCTTCCGACCTCGATTCATCATCGGTCCCGACCGATATCCCTCTCCTTACCTATGGCCAAGAGGATGCTGGAATTTCCTCTGATAAGCATGCTCTAATCATTCCTCCTTTTATTAGCCGTGGCAAAAAGGTCCACCCAGTGCCGTTCTCTGATTCTCCCATGTCGGCTAATCCAAGGCCAATGGATCCAAAAAAGGACTTAGCCGTGTATGGATATGGAACTGTTGCGTGGAAGGAAAGAATGGAGGAGTGGCGGAAGAAACAAAATGAAAGACTTCAAGTAATTAAGCATGAGGGTGGAGGCGGAAAAGGAGAAGACGAGCTTGATGATACAGATTTGCCTATGATGGATGAAGGGAGGCAACCACTGTCGAGAAAGCTGCCGATCTCCTCAAGCAAGATAAATCCATACAGAATGATAATTGTACTTCGAATTGTCATTCTTTGCCTCTTTTTTCACTATCGTATCCTTCATCCTGTCCATGAGGCATATGGATTGTGGTTAACATCAGTCATCTGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTCCCGAAATGGTGCCCAATTGTTCGAGAAACTTACCTTGACCGGTTATCATTACGATATGAAAAAGATGGCAAGCCATCTGAGTTGGCTTCCATTGACATTTACGTCAGTACAGTGGATCCAATGAAGGAGCCTCCTCTCATCACAGCAAACACCGTCCTGTCTATACTTGCTGTTGATTATCCGGTAGATAAGGTTTCATGCTATGTTTCTGATGACGGTGCTGCCATGCTTACTTTTGAAGCCCTTTCGGAAACTTCTGAGTTTGCAAGAAAGTGGGTTCCTTTCTGCAAGAAATTCAATATCGAACCCCGGGCCCCAGAGTGGTATTTTGCCCAGAAGGTTGACTATTTGAAAGACAAAGTTGATCCGGCCTTCATCAGGGAACGTCGTGCAATAAAGAGGGACTATGAAGAATTTAAAGTTCGAATCAATGGGCTCGTTGCCATGGCTCAAAAAGTTCCTGAAGATGGGTGGACAATGCAGGATGGAACTCCGTGGCCCGGGAACAACGTCAGGGATCATCCTGGAATGATTCAGGTATTCCTTGGTCAAAATGGGGTTCGTGACTTGGAAGGAAATGAATTACCTCGTCTTGTGTATGTATCTCGTGAGAAGAGGCCGGGATTTGATCACCACAAGAAAGCCGGAGCCATGAATGCTCTGGTGCGTGTCTCGGCAATCATCTCAAATGCTCCTTACATTTTGAACGTGGATTGTGATCACTACATCAACAACAGCAAGGCACTTCGAGAAGCAATGTGCTTCATGATGGACCCGATTTCTGGAAAAAGAATATGCTACGTGCAGTTTCCACAAAGATTTGATGGGATTGATAGGCATGATCGATACTCGAATCGCAATGTCGTATTCTTCGATATCAACATGAAGGGATTAGATGGTATTCAAGGGCCGATTTACGTCGGAACTGGGTGCGTGTTCAGGAGGCAGGCCCTTTATGGGTATGATGCCCCTGCCAAGAAGAAAACACCAAGAAGGACTTGCAATTGTTTGCCAAAATGGTGCTGCTGTTGCTGCGGAACTCGAAAGAAGACTAAAACAAAGAAGACCAGTGACAAAAAGAAGTTAAAGACCAAAGATACGTCGAAGCAGATTCACGCCCTCGAAAACATTGAGGAAGGAATCGAAGGAATAGATAATGAAAAATCATCTCTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGGCAATCTCCATCATTCATTGCTTCCACACTTATGGAAGATGGCGGTGTGCCCGGAGGAGGGACTTCTGCTTCGCTATTGAAAGAAGCCATCCATGTAATCAGTTGCGGTTACGAAGATAAATCCGAGTGGGGTAAAGAGGTAGGGTGGATATATGGGTCTGTTACAGAGGATATTTTAACAGGTTTCAAGATGCATTGCCACGGCTGGAGATCAGTTTATTGCATTCCTAAAAGGCCAGCATTCAAGGGTTCCGCTCCTATTAACTTGTCCGATCGTCTACACCAAGTTCTTCGGTGGGCTCTTGGATCTGTTGAAATTCTGTTGAGCAGGCACTGTCCGATATGGTACGGATACGGATGTGGTCTGAAGTGGCTCGAGCGTTTCTCGTACATAAACTCCGTTGTTTATCCATTGACGTCGATTCCATTGATCGCTTATTGTACCCTTCCGGCTGTCTGCCTGCTCACAGGGCAGTTTATCGTCCCTGAGCTAAGCAACTATGCCAGTATAATTTTCATGGCCCTTTTCATCTCTATAGCAGCGACCGGTATCCTCGAAATGCAGTGGGGAGGAGTCGGGATCCACGATTGGTGGAGAAACGAACAGTTCTGGGTTATTGGGGGTGCCTCGTCCCACCTTTTTGCACTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTTAACACAAACTTCACTGTCACGTCCAAAGGAGGAGACGAAGGAGATTTCGCTGAGCTTTACCTCTTCAAGTGGACGTCGTTGTTGGTCCCTCCATTGACCTTATTGATCATAAACATCATCGGAGTAGTCGTCGGGATTTCAGATGCCATCAACAACGGTTACGACTCATGGGGCCCGCTCATCGGTAAGCTATTCTTTGCATTCTGGGTGATTGTCCATCTGTACCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCAACCATTATCATTGTGTGGTCCATTCTTCTATCATCCATCCTATCGCTTCTATGGGTCCGAATCAACCCGTTCCTCGACAAGGGTGGCATTGTATTGGAAGTTTGCGGGTTAAACTGTGACGACTAA 3276 46.18 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDELEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDTDDLENEFDIANKDPNSVSEAMLYPHLAVGRGSHANGSGNMASDLDSSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPVPFSDSPMSANPRPMDPKKDLAVYGYGTVAWKERMEEWRKKQNERLQVIKHEGGGGKGEDELDDTDLPMMDEGRQPLSRKLPISSSKINPYRMIIVLRIVILCLFFHYRILHPVHEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDIYVSTVDPMKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFAQKVDYLKDKVDPAFIRERRAIKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNALVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKTPRRTCNCLPKWCCCCCGTRKKTKTKKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPSFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSIPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDEGDFAELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCDD 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15496482 15503611 + MC11g1299 Mch11g1674 680608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1674 1091 CDD mRING-HC-C4C4_CesA 37 87 - -
Mch11g1674 1091 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 509 655 IPR029044 -
Mch11g1674 1091 Pfam Cellulose synthase 363 1078 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Mch11g1674 1091 SUPERFAMILY RING/U-box 28 107 - -
Mch11g1674 1091 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Mch11g1674 1091 FunFam Cellulose synthase 480 654 - -
Mch11g1674 1091 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 883 IPR029044 -
Mch11g1674 1091 FunFam Cellulose synthase 21 112 - -
Mch11g1674 1091 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 275 1059 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Mch11g1674 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Mch11g1674 1091 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1674 Mch-Chr11:15496482 Mch1g1050 Mch-Chr1:13468225 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1674 K10999 - csv:101214061 2103.95