Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1702 ATGGCTTCCTTAGCAGCCTCCACCGCGGCCGCCTCCCTCGGCGTCTCCGAGATGCTCAGAAATCCCCTCAGCTTTGGCGGTGGCTCCCCCAGGTCGGCGCCTTCTGCTTCTAGCTCTGTCACCGTCAAGACTGTCGCGCTTTTCGGGAAGAAACCGGCCGCCAAGGCAAAGCCTTCCGCCGCTGTCTCTCCGGTCAACGACGAGCTCGCCAAGTGGTACGGTCCTGACAGAAGGATTTTCTTGCCGGATGGGCTGTTGGACCGATCTGAGATCCCTGAGTACTTGAACGGAGAAGTCCCCGGAGACTACGGCTACGATCCCTTTGGACTCAGCAAGAAACCAGAAGACTTCAGCAAATATCAGGCATTTGAATTGATCCACGCAAGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAATTCGGAGCCAACTGTGGCCCCGAGGCCGTTTGGTTCAAGACTGGAGCTTTGCTTTTGGATGGAAACACATTGAACTACTTTGGAAACAACATTCCCATCAACCTGATCGTTGCCGTGATTGCCGAGGTCGTCCTCGTCGGTGGCGCAGAATATTACAGAATCATCAACGGCTTGAATTTTGAAGATAAGCTTCACCCGGGTGGGCCGTTCGACCCATTGGGGCTGGCGGATGACCCCGACCAGGCAGCGATCTTGAAGGTGAAGGAGATAAAGAATGGAAGGCTGGCGATGTTTGCAATGCTCGGGTTTTACTTCCAGGCTTACGTGACGGGCGAAGGCCCTGTGGAGAACTTGGCCAAGCATTTGAGTGATCCCTTCGGAAACAATTTGCTCACTGTCATCTCAGGGAATGTCGAAAGAGTTCCAACTCTTTAA 873 54.07 MASLAASTAAASLGVSEMLRNPLSFGGGSPRSAPSASSSVTVKTVALFGKKPAAKAKPSAAVSPVNDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNVERVPTL 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15941280 15944223 + MC11g1313 Mch11g1702 680636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1702 290 Pfam Chlorophyll A-B binding protein 92 253 IPR022796 -
Mch11g1702 290 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 30 279 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Mch11g1702 290 Gene3D Chlorophyll a/b binding protein domain 79 290 - -
Mch11g1702 290 SUPERFAMILY Chlorophyll a-b binding protein 72 280 - -
Mch11g1702 290 FunFam Chlorophyll a-b binding protein, chloroplastic 79 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1702 Mch-Chr11:15941280 Mch1g2002 Mch-Chr1:19602157 1.16E-69 dispersed
Mch11g1702 Mch-Chr11:15941280 Mch2g0724 Mch-Chr2:4940071 6.11E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1702 K08916 - csv:101218137 512.301