Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1732 ATGCATCCACTTAGTTGTTGGCTTCTAAATTCTTTTATGATATTTCCCTTTCTGGATCACCAACAGTCGGGGAACCAGCTATTTGAACAAATTGTGTGTAAGAAATCTGGTAATGTTGGACATCCTTTTGGGTCACATTCTTTCTCATCTCGAGTTGGAATTCCAGATTCTAGACAGAATTTTACTCAAACAGTCACAAAGAATGCAGGTGACCGTGTCTATGCTTCTTATAATGTATATAAGGGCAAAGCTGGAGTCTCTATGATGCCTTGTCTGCCAACTTTCACTAAATTAGATTCTGGGAATCTTGTAATAAGTCGACGTGGTTCAGTAATGCTGACGTTCTTTCCTGCCATAGGCGAGCGCAAGTATGATTGGACAAAGAAACAGTTGTTTTCGTTGTCCGCAACAGAGATTGGTACTTTAATAAGTTTGGGTCCCAGAGACTCTTGTGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGTCTCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACATGCAAAACACCAAAGAATTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAAACAGCTTGCAGTTTTGCCCTGCCGCACATTCTTGGTTGGGACCAGCTGACCAGACCTAGCCACCAGGGCATGGGAAAGGTTGTTCAACCGAATAAGGTAGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGGTGA 771 41.76 MHPLSCWLLNSFMIFPFLDHQQSGNQLFEQIVCKKSGNVGHPFGSHSFSSRVGIPDSRQNFTQTVTKNAGDRVYASYNVYKGKAGVSMMPCLPTFTKLDSGNLVISRRGSVMLTFFPAIGERKYDWTKKQLFSLSATEIGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKSHADGNGYFISLNVVNNMQNTKEFLSVPFTAGEFSVMKTACSFALPHILGWDQLTRPSHQGMGKVVQPNKVDREALSLEWER 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16494870 16499461 + MC11g1331 Mch11g1732 680666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1732 256 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 19 256 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Mch11g1732 256 SUPERFAMILY ssDNA-binding transcriptional regulator domain 71 231 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch11g1732 256 Pfam Whirly transcription factor 79 213 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Mch11g1732 256 Gene3D Transcriptional Coactivator Pc4; Chain A 65 236 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1732 Mch-Chr11:16494870 Mch8g2024 Mch-Chr8:22639439 6.39E-49 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42644 PF08536 Whirly 7.40E-54 CL0609 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1732 K26561 - csv:101219085 378.637