Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1732 ATGCATCCACTTAGTTGTTGGCTTCTAAATTCTTTTATGATATTTCCCTTTCTGGATCACCAACAGTCGGGGAACCAGCTATTTGAACAAATTGTGTGTAAGAAATCTGGTAATGTTGGACATCCTTTTGGGTCACATTCTTTCTCATCTCGAGTTGGAATTCCAGATTCTAGACAGAATTTTACTCAAACAGTCACAAAGAATGCAGGTGACCGTGTCTATGCTTCTTATAATGTATATAAGGGCAAAGCTGGAGTCTCTATGATGCCTTGTCTGCCAACTTTCACTAAATTAGATTCTGGGAATCTTGTAATAAGTCGACGTGGTTCAGTAATGCTGACGTTCTTTCCTGCCATAGGCGAGCGCAAGTATGATTGGACAAAGAAACAGTTGTTTTCGTTGTCCGCAACAGAGATTGGTACTTTAATAAGTTTGGGTCCCAGAGACTCTTGTGAATTCTTCCATGACCCTGGAATGCTTTCAAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGTCTCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACATGCAAAACACCAAAGAATTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAAACAGCTTGCAGTTTTGCCCTGCCGCACATTCTTGGTTGGGACCAGCTGACCAGACCTAGCCACCAGGGCATGGGAAAGGTTGTTCAACCGAATAAGGTAGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGGTGA 771 41.76 MHPLSCWLLNSFMIFPFLDHQQSGNQLFEQIVCKKSGNVGHPFGSHSFSSRVGIPDSRQNFTQTVTKNAGDRVYASYNVYKGKAGVSMMPCLPTFTKLDSGNLVISRRGSVMLTFFPAIGERKYDWTKKQLFSLSATEIGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKSHADGNGYFISLNVVNNMQNTKEFLSVPFTAGEFSVMKTACSFALPHILGWDQLTRPSHQGMGKVVQPNKVDREALSLEWER 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16494870 16499461 + MC11g1331 Mch11g1732 680666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1732 256 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 19 256 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Mch11g1732 256 SUPERFAMILY ssDNA-binding transcriptional regulator domain 71 231 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch11g1732 256 Pfam Whirly transcription factor 79 213 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Mch11g1732 256 Gene3D Transcriptional Coactivator Pc4; Chain A 65 236 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1732 K26561 - - csv:101219085 378.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1732 Mch-Chr11:16494870 Mch8g2024 Mch-Chr8:22639439 6.39E-49 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2024 . 50 278 Whirly Transcription Factor Family AT1G14410 65.1 1.1e-84 310.1
Mch11g1732 . 72 257 Whirly Transcription Factor Family AT1G71260 57.5 5.9e-58 221.1
Mch8g2024 . 78 278 Whirly Transcription Factor Family AT2G02740 70.8 2.1e-83 305.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42644 PF08536 Whirly 7.40E-54 CL0609 Mch TF