Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1733 ATGGCTTATGACCATTTGGATCCATCTAGAGAATATCCTGATGCTTCTGGACCAGGTCCAGTTTCAAGGCCTGCACCAGAACTGAAGGTGTATCAGTTCTTTGTTTTCTGTATTCCTATCCTTTGCACTTTCATTCTCCTATTCCTTTTCTACCTTCTTTATCTTCGTCGCCGAAGGGCTGATTGGGCTTCCATTAGAATGCGAACTTCTCCGCTCAACAACAATGATATCTCTACAGAGTCTGAAGCTGGGCTGAAGAAGGAATTCAGGGAGATGCTGCCCATTATTGTGTACAATGAGACATTCTCTGTCACCGACACGCAATGCTCAGTCTGTTTAGGGGAATACAAAACAGAAGATAAGCTTCAGCGGATACCATCATGTGGGCATGTATTTCACATGGATTGTATTGATCACTGGCTTTCCAACCATGCTACTTGCCCACTCTGTCGTCTCTCGGTCCTGTCTCCGTCTAAACCACCACATATTCAGGTCGACATCGGACTCAGATCGTCCAACGAACGAGAATCCAATCAAGAATCTCCTCAACAAGGCAATCAAACTCATCAGCAAACAAGGCCTCCGGTGTAA 591 45.35 MAYDHLDPSREYPDASGPGPVSRPAPELKVYQFFVFCIPILCTFILLFLFYLLYLRRRRADWASIRMRTSPLNNNDISTESEAGLKKEFREMLPIIVYNETFSVTDTQCSVCLGEYKTEDKLQRIPSCGHVFHMDCIDHWLSNHATCPLCRLSVLSPSKPPHIQVDIGLRSSNERESNQESPQQGNQTHQQTRPPV 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 16502177 16505713 - MC11g1332 Mch11g1733 680667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1733 196 Pfam Ring finger domain 108 151 IPR001841 -
Mch11g1733 196 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Mch11g1733 196 MobiDBLite consensus disorder prediction 1 20 - -
Mch11g1733 196 SUPERFAMILY RING/U-box 93 157 - -
Mch11g1733 196 MobiDBLite consensus disorder prediction 170 196 - -
Mch11g1733 196 CDD RING-H2_EL5-like 108 151 - -
Mch11g1733 196 PANTHER RING-H2 FINGER PROTEIN ATL16 25 177 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Mch11g1733 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 156 IPR013083 -
Mch11g1733 196 SMART ring_2 109 150 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1733 Mch-Chr11:16502177 Mch6g2319 Mch-Chr6:25134256 4.88E-29 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1733 K19039 - csv:101219324 276.174