Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1789 ATGATTACTGAAGCGGTCGAGAATGGAGGAGGCGATATGGAAATTGATGGATTCGAACAGAAGCCCGAGAAAGTTGTGCCCGATGGGTTCGATGTTAACTATCTCAAGATTTACTACGGAAAGCTTTTCCCGTATACTGATTTCTTCAAATGGATGTCTTATGGAAATGATGGCAAGCATCCAGGCAGTGACCAATCCTATTTTGGCCGGAGAGAGTTTTCATTCACGTTGGAGAATGATATATATCTACGATACCAATCTTTCAATAACTTGTCCGAAATGGAGAATTCGATCAAGGAAAAGTGTCCGTTTAAAATTGATATTGGGCCTGTATACAGCGTGGATCTTGCAAAAAGACACGCATATGCTGGTGATAATGTATTTACTCCAGTGGAGAGAGAGCTGATTTTTGATATTGATATGACAGATTATGATGATGTTAGATACTGTTGTTCAGGAGCTGATGTTTGCTTGGATTGCTGGCCTTTAATGACTGCAGCTATCAAAGTGATTGATACTACCCTCCGAGATGACTTTGGATTTAACCACATACTCTGGGTATTTAGTGGCCGACGTGGTGTTCACTGTTGGGTCTGTGATGGCAAAGCAAGAAGGTTGTCTAATGAACAGAGAGCTGCCATCGCTGAACATTTCCATTTATATCAGGGTAATGAAAACAGCCGCAAAAAAATTTCTCTAACAGGTCCTGTTCTTCATCCATTTCTCGCGAGATCATACACTGAAGTTCTCAAGGATAGCTTCGAATCAACATTGCTTTGTAGTCAAAAGATTTTCTCAACTGAGGAGAGATATGAGAAAATCTTAGATATGATTCCTGATGAATCCGTTACCTCAGAACTTCGGGGAAGATGGCAAGAGAACAGGCAGCCCTCTAAAAAAGATGTTAATTATGTTAGATGGGAGCAACTAAAAAGTATGCTGCAATCAGTAAAACATAAGGCACAGGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTAGGCTCGACTTGGAGGTTACTAAACATACGAACCATTTGTTAAAAGCACCATTCTGTGTTCATCCAAAAACAGGTCGTATTTGTGTCCCTATAAACCCCGAAAACTGTGACGAGTTTGATCCTACTACTGTACCAACTCTTGCCCAGCTTCTAGAAGAACTCAATGCTGCTGATATGAACGTAGATGACTGGGATAGAACCTCACTTGGGGAATCCATTAGGTTTTTCAGATCATCATTCTTACAGCCACTGCTGAAATCATGCAAGGAGGAGATAGAATCTTCGTACAATGCTAAAGTGCAACAGTCCAAAAATCCTCTGAGTTGGTAG 1344 40.92 MITEAVENGGGDMEIDGFEQKPEKVVPDGFDVNYLKIYYGKLFPYTDFFKWMSYGNDGKHPGSDQSYFGRREFSFTLENDIYLRYQSFNNLSEMENSIKEKCPFKIDIGPVYSVDLAKRHAYAGDNVFTPVERELIFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIKVIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEHFHLYQGNENSRKKISLTGPVLHPFLARSYTEVLKDSFESTLLCSQKIFSTEERYEKILDMIPDESVTSELRGRWQENRQPSKKDVNYVRWEQLKSMLQSVKHKAQGMRRHVEEIVFSFTYPRLDLEVTKHTNHLLKAPFCVHPKTGRICVPINPENCDEFDPTTVPTLAQLLEELNAADMNVDDWDRTSLGESIRFFRSSFLQPLLKSCKEEIESSYNAKVQQSKNPLSW 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 17298359 17307114 - MC11g1361 Mch11g1789 680723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1789 447 Pfam DNA primase small subunit 137 370 IPR002755 GO:0003896(InterPro)|GO:0006269(InterPro)
Mch11g1789 447 PANTHER DNA PRIMASE SMALL SUBUNIT 33 433 - GO:0003896(PANTHER)|GO:0005658(PANTHER)|GO:0006269(PANTHER)
Mch11g1789 447 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 36 390 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Mch11g1789 447 SUPERFAMILY Prim-pol domain 32 398 - -
Mch11g1789 447 Coils Coil 385 405 - -
Mch11g1789 447 CDD AE_Prim_S 44 379 IPR014052 GO:0003896(InterPro)|GO:0006269(InterPro)
Mch11g1789 447 FunFam DNA primase 22 428 - -
Mch11g1789 447 Gene3D DNA primase, PRIM domain 24 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1789 Mch-Chr11:17298359 Mch11g1790 Mch-Chr11:17316702 1.53E-80 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1789 K02684 - csv:101203146 850.506