Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1841 ACAGCCGCCTTTAGAGGCGTCCGTAAGCGTAAATGGGGCAAATGGGTTTCCGAGATTCGCGAGCCGGGAAAAAAGACCAGAATCTGGCTCGGCAGCTATGACACCCCAGAGATGGCTGCTGCAGCCTACGACGTTGCTGCCCTCCACCTCCGCGGCCCCGACGCCCGCCTCAACTTCCCTGACCTCGTCGACGCCCTCCCGAGGCCCGCCAGCTCCAATCCCGAAGACATTCAGACCGCTGCCCAGCTCGCCGCATTGTGCCTCAAGAGGACCCCCGACGCCGCAGGAGCATGCTCCGCCGTTAGCGTCGGGGCCGCGCCGATTCGGGTGGGGCTGTCGCCGAGCCAAATTCAGGCCATCAATGACTCGCCGTTGGATTCTCCGACCATGTGGATGCAGATGGCTGAGGCGCTTAGTTCGGAGGAAGACTCCATTTTTTTATATGATCATTTTGATGAACAGTGGGAAGACGTGCGCCATCAATCCATTTGGGAT 495 60.0 TAAFRGVRKRKWGKWVSEIREPGKKTRIWLGSYDTPEMAAAAYDVAALHLRGPDARLNFPDLVDALPRPASSNPEDIQTAAQLAALCLKRTPDAAGACSAVSVGAAPIRVGLSPSQIQAINDSPLDSPTMWMQMAEALSSEEDSIFLYDHFDEQWEDVRHQSIWD 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18123578 18124072 - MC11g1389 Mch11g1841 680775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1841 165 ProSiteProfiles AP2/ERF domain profile. 3 60 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1841 165 FunFam Ethylene-responsive transcription factor 2 2 61 - -
Mch11g1841 165 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 115 IPR051032 -
Mch11g1841 165 Gene3D AP2/ERF domain 3 61 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1841 165 SUPERFAMILY DNA-binding domain 4 61 IPR016177 GO:0003677(InterPro)
Mch11g1841 165 CDD AP2 4 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1841 165 SMART rav1_2 3 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1841 165 Pfam AP2 domain 4 52 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1841 165 PRINTS Ethylene responsive element binding protein signature 4 15 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1841 165 PRINTS Ethylene responsive element binding protein signature 42 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1719 Mch-Chr11:16157209 Mch11g1841 Mch-Chr11:18123578 3.17E-31 dispersed
Mch11g1841 Mch-Chr11:18123578 Mch6g0844 Mch-Chr6:5837127 1.06E-32 dispersed
Mch11g1841 Mch-Chr11:18123578 Mch11g1850 Mch-Chr11:18339818 4.48E-63 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42645 PF00847 AP2 1.30E-14 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1841 - - - 0.0