Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g1841 | ACAGCCGCCTTTAGAGGCGTCCGTAAGCGTAAATGGGGCAAATGGGTTTCCGAGATTCGCGAGCCGGGAAAAAAGACCAGAATCTGGCTCGGCAGCTATGACACCCCAGAGATGGCTGCTGCAGCCTACGACGTTGCTGCCCTCCACCTCCGCGGCCCCGACGCCCGCCTCAACTTCCCTGACCTCGTCGACGCCCTCCCGAGGCCCGCCAGCTCCAATCCCGAAGACATTCAGACCGCTGCCCAGCTCGCCGCATTGTGCCTCAAGAGGACCCCCGACGCCGCAGGAGCATGCTCCGCCGTTAGCGTCGGGGCCGCGCCGATTCGGGTGGGGCTGTCGCCGAGCCAAATTCAGGCCATCAATGACTCGCCGTTGGATTCTCCGACCATGTGGATGCAGATGGCTGAGGCGCTTAGTTCGGAGGAAGACTCCATTTTTTTATATGATCATTTTGATGAACAGTGGGAAGACGTGCGCCATCAATCCATTTGGGAT | 495 | 60.0 | TAAFRGVRKRKWGKWVSEIREPGKKTRIWLGSYDTPEMAAAAYDVAALHLRGPDARLNFPDLVDALPRPASSNPEDIQTAAQLAALCLKRTPDAAGACSAVSVGAAPIRVGLSPSQIQAINDSPLDSPTMWMQMAEALSSEEDSIFLYDHFDEQWEDVRHQSIWD | 165 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 18123578 | 18124072 | - | MC11g1389 | Mch11g1841 | 680775 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g1841 | 165 | ProSiteProfiles | AP2/ERF domain profile. | 3 | 60 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g1841 | 165 | FunFam | Ethylene-responsive transcription factor 2 | 2 | 61 | - | - | |
Mch11g1841 | 165 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 3 | 115 | IPR051032 | - | |
Mch11g1841 | 165 | Gene3D | AP2/ERF domain | 3 | 61 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g1841 | 165 | SUPERFAMILY | DNA-binding domain | 4 | 61 | IPR016177 | GO:0003677(InterPro) | |
Mch11g1841 | 165 | CDD | AP2 | 4 | 62 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g1841 | 165 | SMART | rav1_2 | 3 | 66 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g1841 | 165 | Pfam | AP2 domain | 4 | 52 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g1841 | 165 | PRINTS | Ethylene responsive element binding protein signature | 4 | 15 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g1841 | 165 | PRINTS | Ethylene responsive element binding protein signature | 42 | 62 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g1719 | Mch-Chr11:16157209 | Mch11g1841 | Mch-Chr11:18123578 | 3.17E-31 | dispersed | |
Mch11g1841 | Mch-Chr11:18123578 | Mch6g0844 | Mch-Chr6:5837127 | 1.06E-32 | dispersed | |
Mch11g1841 | Mch-Chr11:18123578 | Mch11g1850 | Mch-Chr11:18339818 | 4.48E-63 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42645 | PF00847 | AP2 | 1.30E-14 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g1841 | - | - | - | 0.0 |