Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g1850 | ATGGGAGAGCCCAGTTCAATGGGGAGCCATGGCGCTGCAACATCGAGCTATCGAGGGGTTCGCAAGAGGAAATGGGGAAAATGGGTTTCTGAGATTCGCGAGCCGGGGAAGAAGACAAGGATTTGGCTCGGAAGCTTCGAGACCCCGGAGATGGCAGCGGCAGCCTACGACGTTGCCGCCTACCACTTCCGGGGCCGCGACGCCCGCCTCAACTTCCCCCATCTTGCCAACACACTCCCTTACCCACTTGGCTCCGGTGCTGAGGACATTCGCCTCGCTGCCCATGAGGCAGCACTGCGGTTGAGAACAGCGCCCGCCGCCACAGTGGAAGGTAGTGGGACTAGTTCGAGCTCTGGGTTGGCCCCAATCACAGTTCGACTATCGCCGAGCCAAATTCAGGCGATTAACGAGTCGCCGTTGGACTCGCCGCCCAAGATGTGGATGCAGATGATGCAGGAGTATTCAAACGCCATGTTCGCCGATGACATGGACGAGGAGAAATGGGAGAGTATGCAAAATGATTCACTGTGGGATCCT | 537 | 58.1 | MGEPSSMGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLANTLPYPLGSGAEDIRLAAHEAALRLRTAPAATVEGSGTSSSSGLAPITVRLSPSQIQAINESPLDSPPKMWMQMMQEYSNAMFADDMDEEKWESMQNDSLWDP | 179 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 18339818 | 18340354 | - | MC11g1391 | Mch11g1850 | 680784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g1850 | 179 | PRINTS | Ethylene responsive element binding protein signature | 39 | 55 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g1850 | 179 | PRINTS | Ethylene responsive element binding protein signature | 17 | 28 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g1850 | 179 | CDD | AP2 | 15 | 75 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g1850 | 179 | FunFam | Ethylene-responsive transcription factor 2 | 15 | 74 | - | - | |
Mch11g1850 | 179 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 14 | 151 | IPR051032 | - | |
Mch11g1850 | 179 | SMART | rav1_2 | 16 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g1850 | 179 | SUPERFAMILY | DNA-binding domain | 15 | 74 | IPR016177 | GO:0003677(InterPro) | |
Mch11g1850 | 179 | ProSiteProfiles | AP2/ERF domain profile. | 16 | 73 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g1850 | 179 | Gene3D | AP2/ERF domain | 16 | 74 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch11g1850 | 179 | Pfam | AP2 domain | 16 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g1850 | Mch-Chr11:18339818 | Mch11g1861 | Mch-Chr11:18453565 | 8.07E-35 | dispersed | |
Mch11g1841 | Mch-Chr11:18123578 | Mch11g1850 | Mch-Chr11:18339818 | 4.48E-63 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42646 | PF00847 | AP2 | 3.40E-13 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g1850 | - | - | - | 0.0 |