Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1850 ATGGGAGAGCCCAGTTCAATGGGGAGCCATGGCGCTGCAACATCGAGCTATCGAGGGGTTCGCAAGAGGAAATGGGGAAAATGGGTTTCTGAGATTCGCGAGCCGGGGAAGAAGACAAGGATTTGGCTCGGAAGCTTCGAGACCCCGGAGATGGCAGCGGCAGCCTACGACGTTGCCGCCTACCACTTCCGGGGCCGCGACGCCCGCCTCAACTTCCCCCATCTTGCCAACACACTCCCTTACCCACTTGGCTCCGGTGCTGAGGACATTCGCCTCGCTGCCCATGAGGCAGCACTGCGGTTGAGAACAGCGCCCGCCGCCACAGTGGAAGGTAGTGGGACTAGTTCGAGCTCTGGGTTGGCCCCAATCACAGTTCGACTATCGCCGAGCCAAATTCAGGCGATTAACGAGTCGCCGTTGGACTCGCCGCCCAAGATGTGGATGCAGATGATGCAGGAGTATTCAAACGCCATGTTCGCCGATGACATGGACGAGGAGAAATGGGAGAGTATGCAAAATGATTCACTGTGGGATCCT 537 58.1 MGEPSSMGSHGAATSSYRGVRKRKWGKWVSEIREPGKKTRIWLGSFETPEMAAAAYDVAAYHFRGRDARLNFPHLANTLPYPLGSGAEDIRLAAHEAALRLRTAPAATVEGSGTSSSSGLAPITVRLSPSQIQAINESPLDSPPKMWMQMMQEYSNAMFADDMDEEKWESMQNDSLWDP 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18339818 18340354 - MC11g1391 Mch11g1850 680784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1850 179 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1850 179 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1850 179 CDD AP2 15 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1850 179 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Mch11g1850 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 151 IPR051032 -
Mch11g1850 179 SMART rav1_2 16 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1850 179 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677(InterPro)
Mch11g1850 179 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1850 179 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch11g1850 179 Pfam AP2 domain 16 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1850 Mch-Chr11:18339818 Mch11g1861 Mch-Chr11:18453565 8.07E-35 dispersed
Mch11g1841 Mch-Chr11:18123578 Mch11g1850 Mch-Chr11:18339818 4.48E-63 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42646 PF00847 AP2 3.40E-13 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1850 - - - 0.0