Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1889 TTGGCTAGCTTGTCTAAAGCGGCTGAGACTGAACTTGTAATGGCTGGATGGCCTTCGTGGTTGGCTTCGGTTGCCGGAGAAGCCATCAAGGGGTGGGTGCCTCGTCGGGCTGACTCCTTTGAGAAGTTAGACAAAATCGGACAGGGAACTTATAGCAGTGTGTATAAAGCCCGTGACCTTGAAACCGGTAAAACTGTGGCATTGAAAAAAGTGAGATTTGTAAATATGGATCCAGAAAGTGTTCGTTTTATGGCTAGGGAAATATATATTTTGCGTAAACTTGATCATCCAAACGTTATGAAGCTCGAGTGTCTAGTCACTTCGAGAGTGTCAGGCAGCTTGTACCTTGTTTTTGAATACATGGAGCATGACCTTGCAGGTCTCGCAGCAGCTCCTGGACATAAGTTTACTGAGGCTCAGATTAAATGTTTTGTGCAACAATTGCTGCATGGACTCGAACACTGTCATAGTCGGGGAGTTCTGCACCGGGATATCAAAGGTTCAAATCTTCTCGTTGATAGTAATGGTGTGCTCAAGATTGGAGACTTTGGTCTTGCTACCTTTTTTAAGCCTGAACAAAAGCAGCCATTGACGAGTCGGGTAGTGACGTTGTGGTACAGGGCACCCGAGCTTTTGCTCGGTGCTACTGATTATGGACCTGCCATTGATCTCTGGAGCTGTGGCTGTATCGTCGCTGAACTATTTGCTGGAAAACCTATTATGCCAGGAAGAACAGAGGTGGAACAAATGCACAAGATTTTCAAGCTCTGTGGTTCACCATCTGAGGAGTTCTGGCGGAGAACAAAATTGCCACATGCAACCAGCTTCAAACCTCATCACCCTTATAAAAGCTGCCTTTCTGAGACGTTTAAAAATTTCCCTTCTTCAGCTTTGGCTCTTGTAAATAAACTACTTGCCATAGAACCAGAGCACAGAGGATCAGCTACTTCAGCTCTCAGCAGTGAGTTTTTCATAACGGAACCTCTCCCTTGTGACCCTTCAAGCTTACCAAAATATCCTCCGAGCAAGGAATACGATGCAAAGCTTCGGAACGAAGAAGAGAGAAAGTATGGTTCA 1077 45.4 LASLSKAAETELVMAGWPSWLASVAGEAIKGWVPRRADSFEKLDKIGQGTYSSVYKARDLETGKTVALKKVRFVNMDPESVRFMAREIYILRKLDHPNVMKLECLVTSRVSGSLYLVFEYMEHDLAGLAAAPGHKFTEAQIKCFVQQLLHGLEHCHSRGVLHRDIKGSNLLVDSNGVLKIGDFGLATFFKPEQKQPLTSRVVTLWYRAPELLLGATDYGPAIDLWSCGCIVAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEEFWRRTKLPHATSFKPHHPYKSCLSETFKNFPSSALALVNKLLAIEPEHRGSATSALSSEFFITEPLPCDPSSLPKYPPSKEYDAKLRNEEERKYGS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18731472 18733764 + MC11g1416 Mch11g1889 680823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1889 359 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g1889 359 FunFam probable serine/threonine-protein kinase At1g54610 27 122 - -
Mch11g1889 359 MobiDBLite consensus disorder prediction 329 359 - -
Mch11g1889 359 Gene3D Transferase(Phosphotransferase) domain 1 123 358 - -
Mch11g1889 359 SUPERFAMILY Protein kinase-like (PK-like) 33 332 IPR011009 -
Mch11g1889 359 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524(InterPro)
Mch11g1889 359 FunFam probable serine/threonine-protein kinase At1g54610 123 359 - -
Mch11g1889 359 PANTHER CELL DIVISION PROTEIN KINASE 39 324 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Mch11g1889 359 Gene3D Phosphorylase Kinase; domain 1 27 122 - -
Mch11g1889 359 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g1889 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g1889 359 SMART serkin_6 40 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g1889 359 CDD STKc_CDK9_like 40 324 - -
Mch11g1889 359 MobiDBLite consensus disorder prediction 343 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1889 Mch-Chr11:18731472 Mch5g0670 Mch-Chr5:4518006 6.42E-195 dispersed
Mch8g0963 Mch-Chr8:6861752 Mch11g1889 Mch-Chr11:18731472 2.99E-19 dispersed
Mch11g1889 Mch-Chr11:18731472 Mch10g1090 Mch-Chr10:8041558 1.27E-200 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77089 PF00069 Pkinase 2.40E-70 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1889 - - - 0.0