Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g1925 | ATGGCTCGTGGGAAGGTTCAGATGAAGAGGATTGAGAACCCTGTGCACAGGCAGGTTACCTTCTGCAAGCGCCGCGCTGGGCTCCTTAAGAAGGCCAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGTCTTTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAACCACACCAGTAGGACTCAGCCACCGGACCCATCCATTGAAAACCAAACCCTGGAAATAAAGGAGGAGGTCAACAGGCTGAAACAAGAAATTGAAGTCCAAAAGGGTCTCAGGAACGCATTTGGAGGAGGAGCTGAAGGAATGACATTGGATGAGCTTGATATGTTTGAGAAGCAACTTGAGATTTGGATTTGTCAAGTGCGTTCTACAAAGATGAAGTTCATGTGTCAAGAGATTGAAGCATTGAAAAACCAGGATTTAATGCTGAAAGCTGTCAATAAGTATCTTCATGATAAGATGGAGGAAAACATTGGCTACACTACTAACATTGAAGCTGTGAATAATAATACTAACTTTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACT | 615 | 43.58 | MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATKGTMQGLIERYMNHTSRTQPPDPSIENQTLEIKEEVNRLKQEIEVQKGLRNAFGGGAEGMTLDELDMFEKQLEIWICQVRSTKMKFMCQEIEALKNQDLMLKAVNKYLHDKMEENIGYTTNIEAVNNNTNFQYPLTIQDELFQLCT | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 19087940 | 19094855 | - | MC11g1435 | Mch11g1925 | 680859 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g1925 | 205 | ProSiteProfiles | K-box domain profile. | 88 | 177 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Mch11g1925 | 205 | Gene3D | - | 15 | 78 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g1925 | 205 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g1925 | 205 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g1925 | 205 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g1925 | 205 | Pfam | K-box region | 85 | 172 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Mch11g1925 | 205 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 56 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g1925 | 205 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g1925 | 205 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 184 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch11g1925 | 205 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g1925 | 205 | SUPERFAMILY | SRF-like | 1 | 75 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g1925 | 205 | CDD | MADS_MEF2_like | 2 | 75 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g1925 | Mch-Chr11:19087940 | Mch2g0713 | Mch-Chr2:4873489 | 1.08E-36 | dispersed | |
Mch11g1925 | Mch-Chr11:19087940 | Mch11g1928 | Mch-Chr11:19162068 | 4.28E-34 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42650 | PF01486 | K-box | 3.90E-18 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g1925 | - | - | - | 0.0 |