Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1925 ATGGCTCGTGGGAAGGTTCAGATGAAGAGGATTGAGAACCCTGTGCACAGGCAGGTTACCTTCTGCAAGCGCCGCGCTGGGCTCCTTAAGAAGGCCAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGTCTTTTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTCGCCACTAAAGGAACCATGCAAGGGCTTATTGAAAGGTACATGAACCACACCAGTAGGACTCAGCCACCGGACCCATCCATTGAAAACCAAACCCTGGAAATAAAGGAGGAGGTCAACAGGCTGAAACAAGAAATTGAAGTCCAAAAGGGTCTCAGGAACGCATTTGGAGGAGGAGCTGAAGGAATGACATTGGATGAGCTTGATATGTTTGAGAAGCAACTTGAGATTTGGATTTGTCAAGTGCGTTCTACAAAGATGAAGTTCATGTGTCAAGAGATTGAAGCATTGAAAAACCAGGATTTAATGCTGAAAGCTGTCAATAAGTATCTTCATGATAAGATGGAGGAAAACATTGGCTACACTACTAACATTGAAGCTGTGAATAATAATACTAACTTTCAATATCCACTAACTATACAGGATGAGTTATTTCAGCTTTGCACT 615 43.58 MARGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELATKGTMQGLIERYMNHTSRTQPPDPSIENQTLEIKEEVNRLKQEIEVQKGLRNAFGGGAEGMTLDELDMFEKQLEIWICQVRSTKMKFMCQEIEALKNQDLMLKAVNKYLHDKMEENIGYTTNIEAVNNNTNFQYPLTIQDELFQLCT 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19087940 19094855 - MC11g1435 Mch11g1925 680859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1925 205 ProSiteProfiles K-box domain profile. 88 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch11g1925 205 Gene3D - 15 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1925 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1925 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1925 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1925 205 Pfam K-box region 85 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch11g1925 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1925 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1925 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 184 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch11g1925 205 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1925 205 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1925 205 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1925 Mch-Chr11:19087940 Mch2g0713 Mch-Chr2:4873489 1.08E-36 dispersed
Mch11g1925 Mch-Chr11:19087940 Mch11g1928 Mch-Chr11:19162068 4.28E-34 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42650 PF01486 K-box 3.90E-18 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1925 - - - 0.0