Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1928 ATGGGGAGAGGGAAGATCGAGATTAAGCGGATCGAGAACACGACGAATCGGCAGGTGACGTTCTGCAAGAGGAGGAATGGACTGCTGAAGAAAGCTTATGAACTGTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCCAGCCGTGGTCGCCTCTATGAATACTCCAATAACAGCATCAAAACTACCATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACTAGCTCTGTCACTGAACTCAATACTCAATATTATCAGCAAGAATCTGCAAAGCTGCGCCAACAAATACAAATGCTACAGAATTCCAACAGCAATCTTGTTAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTGAAGGAATTGAAGCAGCTTGAGAATAGGCTTGAAAGAGGCATCACTAGGATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTACCTGCAGAAAAGAGAGATCGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCAGAAGTGGAGAGGCTTCAGCAAGCCAACATGGTTTCTGGGCAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGAAATTTCTTCACTCCTAATATGATGGAAGGTGGAGCTGTCACTTTCTCACACCAAGACAAGAAGATGCTTCATCTTGGG 681 44.49 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNSNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFTPNMMEGGAVTFSHQDKKMLHLG 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19162068 19172089 + MC11g1438 Mch11g1928 680862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1928 227 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch11g1928 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch11g1928 227 Pfam K-box region 86 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch11g1928 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1928 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1928 227 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1928 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1928 227 Coils Coil 128 167 - -
Mch11g1928 227 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1928 227 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1928 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1928 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1928 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g1928 227 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch11g1928 227 FunFam agamous-like MADS-box protein AGL11 13 96 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0705 Mch-Chr10:4870193 Mch11g1928 Mch-Chr11:19162068 6.96E-24 dispersed
Mch11g1928 Mch-Chr11:19162068 Mch1g1976 Mch-Chr1:19399983 7.18E-87 dispersed
Mch11g1925 Mch-Chr11:19087940 Mch11g1928 Mch-Chr11:19162068 4.28E-34 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42651 PF01486 K-box 1.60E-23 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1928 K09264 - csv:101208072 407.142