Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g1960 ATGCAATCCACAACTGGTGGCGGTACTACCAGCAGCGGCGGCGGCGACCTCGGGCCCCGTGCTAGCGGACTCGCTCGCTTCCGCTCAGCTCCGGCCACCTGGTTGGAAGCGCTTCTAGAGGACGACGAGGAAGACCCTCTGAAGCCCAATCAGTGCTTGACTCAGCTTCTCGCCGGCAACTCCCCGGCCCTCGGTTCCCCGCCGGATCAAGGCCTTTTCGACGCCAATCCCAATCCCAATCCCTCGCCCGCCTTCGCCCGCCAGAATAGTTCTCCGGCCGAGTTTCTCGGCGAGGGTTTCTACTCTGCCTATGGTGTTACTTCCGCTAAGTACGAATTGCCCTCCCCGGGTCTCGACATCTCTCCCACGTCCAAGCGCGGGAGAGAGGTGGAGGCCCAAAATTTCCACTCCAAATTTTCGTCTCAGCTGAAAAGGGAGGAAAGTGGGGTTTCCAGTTTGTTAGACATGGAAATGGAGAAGCTATTGGAGGACTCTGTCCCCTGCCGTGTTCGGGCCAAGCGCGGCTGTGCTACGCATCCTCGGAGCATTGCTGAGAGGGTTCGCAGGACTAAAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTGCCCAACATGGATAAGCAGACGAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAGGCAGATTCAGGAACTCACAGAGCACCAGCGCGGGTGCAAATGCATGGTTAAGGAATAA 741 56.01 MQSTTGGGTTSSGGGDLGPRASGLARFRSAPATWLEALLEDDEEDPLKPNQCLTQLLAGNSPALGSPPDQGLFDANPNPNPSPAFARQNSSPAEFLGEGFYSAYGVTSAKYELPSPGLDISPTSKRGREVEAQNFHSKFSSQLKREESGVSSLLDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTKISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQRQIQELTEHQRGCKCMVKE 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19507199 19510923 - MC11g1458 Mch11g1960 680894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g1960 246 SMART finulus 182 232 IPR011598 GO:0046983(InterPro)
Mch11g1960 246 FunFam Transcription factor bHLH130 family 177 245 - -
Mch11g1960 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 226 IPR011598 GO:0046983(InterPro)
Mch11g1960 246 MobiDBLite consensus disorder prediction 1 16 - -
Mch11g1960 246 Pfam Helix-loop-helix DNA-binding domain 182 227 IPR011598 GO:0046983(InterPro)
Mch11g1960 246 MobiDBLite consensus disorder prediction 1 24 - -
Mch11g1960 246 MobiDBLite consensus disorder prediction 73 89 - -
Mch11g1960 246 MobiDBLite consensus disorder prediction 58 90 - -
Mch11g1960 246 Coils Coil 216 236 - -
Mch11g1960 246 CDD bHLH_AtbHLH_like 181 233 IPR045239 -
Mch11g1960 246 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 50 240 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Mch11g1960 246 Gene3D - 177 246 IPR036638 GO:0046983(InterPro)
Mch11g1960 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 241 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1960 Mch-Chr11:19507199 Mch2g0122 Mch-Chr2:922089 5.06E-32 dispersed
Mch11g1960 Mch-Chr11:19507199 Mch5g1414 Mch-Chr5:15229575 2.91E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42653 PF00010 HLH 3.60E-10 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g1960 - - - 0.0