Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g1960 | ATGCAATCCACAACTGGTGGCGGTACTACCAGCAGCGGCGGCGGCGACCTCGGGCCCCGTGCTAGCGGACTCGCTCGCTTCCGCTCAGCTCCGGCCACCTGGTTGGAAGCGCTTCTAGAGGACGACGAGGAAGACCCTCTGAAGCCCAATCAGTGCTTGACTCAGCTTCTCGCCGGCAACTCCCCGGCCCTCGGTTCCCCGCCGGATCAAGGCCTTTTCGACGCCAATCCCAATCCCAATCCCTCGCCCGCCTTCGCCCGCCAGAATAGTTCTCCGGCCGAGTTTCTCGGCGAGGGTTTCTACTCTGCCTATGGTGTTACTTCCGCTAAGTACGAATTGCCCTCCCCGGGTCTCGACATCTCTCCCACGTCCAAGCGCGGGAGAGAGGTGGAGGCCCAAAATTTCCACTCCAAATTTTCGTCTCAGCTGAAAAGGGAGGAAAGTGGGGTTTCCAGTTTGTTAGACATGGAAATGGAGAAGCTATTGGAGGACTCTGTCCCCTGCCGTGTTCGGGCCAAGCGCGGCTGTGCTACGCATCCTCGGAGCATTGCTGAGAGGGTTCGCAGGACTAAAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTGCCCAACATGGATAAGCAGACGAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAGGCAGATTCAGGAACTCACAGAGCACCAGCGCGGGTGCAAATGCATGGTTAAGGAATAA | 741 | 56.01 | MQSTTGGGTTSSGGGDLGPRASGLARFRSAPATWLEALLEDDEEDPLKPNQCLTQLLAGNSPALGSPPDQGLFDANPNPNPSPAFARQNSSPAEFLGEGFYSAYGVTSAKYELPSPGLDISPTSKRGREVEAQNFHSKFSSQLKREESGVSSLLDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTKISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQRQIQELTEHQRGCKCMVKE | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 19507199 | 19510923 | - | MC11g1458 | Mch11g1960 | 680894 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g1960 | 246 | SMART | finulus | 182 | 232 | IPR011598 | GO:0046983(InterPro) | |
Mch11g1960 | 246 | FunFam | Transcription factor bHLH130 family | 177 | 245 | - | - | |
Mch11g1960 | 246 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 176 | 226 | IPR011598 | GO:0046983(InterPro) | |
Mch11g1960 | 246 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
Mch11g1960 | 246 | Pfam | Helix-loop-helix DNA-binding domain | 182 | 227 | IPR011598 | GO:0046983(InterPro) | |
Mch11g1960 | 246 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Mch11g1960 | 246 | MobiDBLite | consensus disorder prediction | 73 | 89 | - | - | |
Mch11g1960 | 246 | MobiDBLite | consensus disorder prediction | 58 | 90 | - | - | |
Mch11g1960 | 246 | Coils | Coil | 216 | 236 | - | - | |
Mch11g1960 | 246 | CDD | bHLH_AtbHLH_like | 181 | 233 | IPR045239 | - | |
Mch11g1960 | 246 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 50 | 240 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Mch11g1960 | 246 | Gene3D | - | 177 | 246 | IPR036638 | GO:0046983(InterPro) | |
Mch11g1960 | 246 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 179 | 241 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g1960 | Mch-Chr11:19507199 | Mch2g0122 | Mch-Chr2:922089 | 5.06E-32 | dispersed | |
Mch11g1960 | Mch-Chr11:19507199 | Mch5g1414 | Mch-Chr5:15229575 | 2.91E-33 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42653 | PF00010 | HLH | 3.60E-10 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g1960 | - | - | - | 0.0 |