Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0085 ATGTACTCCACCACTGATAAGATGGGAAAGGAAAATATGCTGCAGAGAGTAGATGACCATGCTGAAGCAAATGGTTGTTCGACTATAGAGAATGAAGATTTGGGTTCTCAATCTCGTCATAGCGTAGGCAAGGATTCTGGACTGCCAAGTTGTCGTGTGTGTCAATGTACTGAATCTGACAGAAGGGGTGATGCTGTTTTAGGATTTCTGGGCATCACTCCACCATTATCGCAAGCAAGAAAAAATGATGGGGATTTTAAGCCAGAGAAGCAAAACCTAGAAAATGTTGATGGCAGCCCTGTGCTGAACAAAAATGTTAAAGGGGATTCTGGTTCAATTGAGTTCATTGGCCCTAATGGGGAGGTTTTCATTTGCAGAGCTGATATCGAAACGGGTTCATGTAATAATGAAGATTCATTGGTGGAGCTTGGGTGTTCTTGCAAGAGTGACCTTGCTCTTGTACATTATGCATGTGCTCTCAAGTGGTTTGTCAGCCATGGATCTACAGTTTGTGAAATCTGTGGATGTATTGCAGAAAATATTAGAACTGATGACTTTAGAAAGGTTGTGAGTTCTTTGAAGGAATATGAAGCTTTAAGGGAAAGAATTGCTACTGGGGAACCTAATCCTATGCAGACTCATACTAGTACTGATATAGATCCTGATGCTATTGCTGCTGTCCGCAGGCAGCGGCTTAGTGAAATCTCATTGTGGTTTAGTCCTCATAACTATAATAGCAACAATAATTCTACTGCAGCCTCCCAGGTTGTTTCTGAACATCTGAATACCATCTCAGAAAATGTTGTCCCTTCCGAAAATCCTGCAACCAGGTGGGCTGTTGAGGCTACTGGAATTCTCCTTGCTACAGGATTGCTTACTGTTACGCTTGCTTGGCTAATAGCTCCTCGCGTAGGGAAGAAAACCGCGAGTAGTGGCCTTCATATTCTCCTTGGAGGTGTTTGTGCATTAACAGTAGTGGTTTTCTTCCGTTATTTTGTGCTCACTAGGATAAAATACGGACCTGCACGATACTGGGCTATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGCATTTGGGCATCGAGAACACATGGTGCTCACACGACATAA 1110 42.97 MYSTTDKMGKENMLQRVDDHAEANGCSTIENEDLGSQSRHSVGKDSGLPSCRVCQCTESDRRGDAVLGFLGITPPLSQARKNDGDFKPEKQNLENVDGSPVLNKNVKGDSGSIEFIGPNGEVFICRADIETGSCNNEDSLVELGCSCKSDLALVHYACALKWFVSHGSTVCEICGCIAENIRTDDFRKVVSSLKEYEALRERIATGEPNPMQTHTSTDIDPDAIAAVRRQRLSEISLWFSPHNYNSNNNSTAASQVVSEHLNTISENVVPSENPATRWAVEATGILLATGLLTVTLAWLIAPRVGKKTASSGLHILLGGVCALTVVVFFRYFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2192504 2211883 - MC01g0032 Mch1g0085 674977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0085 369 PANTHER ZINC FINGER, RING-CH-TYPE 38 358 - -
Mch1g0085 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 183 IPR013083 -
Mch1g0085 369 ProSiteProfiles Zinc finger RING-CH-type profile. 117 181 IPR011016 GO:0008270(InterPro)
Mch1g0085 369 Pfam RING-variant domain 135 174 IPR011016 GO:0008270(InterPro)
Mch1g0085 369 SUPERFAMILY RING/U-box 136 176 - -
Mch1g0085 369 SMART ringv_2 124 175 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0085 Mch-Chr1:2192504 Mch5g1893 Mch-Chr5:18987619 4.09E-09 dispersed
Mch1g0085 Mch-Chr1:2192504 Mch4g2531 Mch-Chr4:25949048 2.58E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0085 - - - 0.0