Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0184 ATGGATGATTGCCCCACTCACCATCAGCTGCAGCTGCAGGCGCAGGCGCAGGATTCTAAGGAGTTGGAGTTCGATCTCGGATCCGACGAGCCTGAGGCCGCCCCTCTCCCCCTCGCCGTTACTTCCAGGGTTCTGCACATGTTCGGAGACATCGCAGCAGGCCCCGCTTATAGCTTTTCGAAATGGCTAGAACTCGTCCGTAAACGTAACGGCAAACATCGCCCTTCTGCCTTCCACAACCGCCCTCATCCACCCTTCAACATGCCTTATGGTGTAGAAGAACTTGTCACTGAGTCCAGAAGTCTTCCTGCTACTGAGCAATCAACTGAAACCAATTTGTGGGATAGGCTCGCTAAAGCTTCAATGATGGACATTGAATCGAGCTCTTTTTCGTGGGATAGGCTCCTGTCTCTTCACCGCACTGAACACAGTAGCAGCACTGAACATTCAGAAGACGAGATGAATAAACCCCTTGAGGTCACTGTAAATTCTGGTGGAGTCGTTTTCTTTGCGCTCTTCAGTCAGCTTGGTTATGACGATAACTTTCCAAAGGAAGCAGCTGCTGTTATAAAGATATCATCTTCAAGAATGGCTACACAATCTGAACGTCTGGGCTACGAATTTGCCAAGTGGCTTGGAGTTCAAACTCCACAGGCTAGAGTTATTCATAATTCTAGCATGGAATGGCTCCAAATAAAAGAAGCTGCAGAGAAGGCACGAGATGTTGCCTGTTTAGAGGGTGACGAGGTTGGTGAAATGACATGTTCTGAACTATTGGAAGCACTCGAATTAAGCAGATGCCTTTTTCTAATGAGCTATGTCCACGGGTCTTCTTTATTAGAAAGTTCAAGTGCATTTGAATCACGGGAAGTAGCCGAGAAATTAGCAGCTGCTATTGGAAGGATCTTGTTATTGGACCTTGTCATCAGAAATGAAGATAGGCTACCTTGCCGTCTTCTTCGTTGGCGTGGAAATTCTGCAAATTTGCTCTTTGCCGATAGAGTAACATGTGCAAGTATGAATGCATTTGAGGAAGCCTTTGATTCTGCTATTAAGCGATATAGACCAAAGGTTGTTACTATGCTTCAGAAGGAAAGAAGGGCAACTTCAGTGGACAGTAGACTGAGTTCTAATTCAAGTCTGCTATTAGAGGCCTCTGAACTTTGTGACATTATTGAATCCCCAAAATCTAGTAACCTAAGTGTAAAAAGTCAAATATCGGACGATATGATGACTTGTGATTTTAGCATTGTGGCTATTGACTCCGGTGTACCTCGTCGACCCCCAGCTGGAAAACGTGCTAATGACCAGTCAATTTACCCCAAGTTAGTTGAGTTGCTACTTAACAGTTCTGAGTTCTCCTCTAATTTATTACATGACATTACAGGAGGGAAATTAGGGTTCCCTTCATTAGCCGATGCCAACTCAACCACTGGTATACAGTTCACGGATATGACTTCCATTGTCCATGAATTTCGTTACGGGTTCCGTGCTGCTCTTAGGGATCTGCAAGGATTTCACATATTTTTGCTTACACTTCACCAAAAGTTGGACAACTCACTACGAGCATTCATGAATATCATAAATAAATTTCCCTTGGGGGAATCTGATAAAGAAGATTCAGGGGTTCCTGAGTCCCATTCGCAAGTTTCTGCCACTTGTCATTGTCTATCTCCACGTGGTAAGGAACGAGCCTCTAATGACAGTAGTGTGGATTTTACAGATTCAGCTCCAAGATCATCGTCATTAGGAAATAAAGAAAGCTCAGACTCAACTTCTCCCTTGTCACGAGATAGCTCACAAGGAAAGTTATACAGGGGAAGTGCAGAGCCCATTCGTAGCCTTCGTTTGACTGCAAAGCTTCGAGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCAAACAAAGAATTGGATATGTGGAATGAAGTGCTAAAGAATGAAGCGGTTAAACTCTGCCAAGAGAACAAATTTAATACTGGGTTTTTTGAGGGCAGCGATAGTCATGGAGTTGTCGATGCTTATGAATTGAAGGTGAGACTTGAGCACATTCTTGAAAGGATTGCACTAATATCTGAGGCTGCAAATACAGAAAGGCCTTCTTCAGTTACAGCTGCCTTGTTTATAGGGGGTGCCTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTAGGAGTCACTCATATCTTATGTCTTTGCTCAAATGAAATTGGACAGTCAGATTCTCAGTTTCCTGATTTATTTGAATACAAAAATTTTTCCATAAGTGATAATGAAGACTCAAACATCAGCAGTATCTTTGAAGAAGCTTGTGATTTTATTGATGACATTGAAAGTAAGAGTGGAAAGGTTCTGGTTCATTGCTTTGAAGGGAGAAGCAGAAGTGCCACATTAGTTCTTGCTTACCTGATGCTCAGAAAGAATTATACACTGTTAAAGGCATGGAGTGCTCTGAAACGAGTTCACCGTCGAGCTCAGCCTAATGATGGGTTTGCTAAAATATTACTAGAATTAGATCGACGAATACATGGAAAAGTTTCGATGGAGTGGCAATCACGGAAACCAACGATGAAAGTTTGCCCAATTTGTGGGAAAAATGCAGGTCTGAGTAGTAGCTCATTGAAGCTTCATCTGCAAAAATCACACAAGAAACTATCATCTGGGAGTGTAGACAGTGCAATGACAATGGAAATACAGAAAGCATTAACAGCTCTGAGAATTAGTCGTGGGGGAAGCGTAAGCCCCACCCAGAGGCAATCTCTTCTCATCTTGGATGAATAG 2781 43.19 MDDCPTHHQLQLQAQAQDSKELEFDLGSDEPEAAPLPLAVTSRVLHMFGDIAAGPAYSFSKWLELVRKRNGKHRPSAFHNRPHPPFNMPYGVEELVTESRSLPATEQSTETNLWDRLAKASMMDIESSSFSWDRLLSLHRTEHSSSTEHSEDEMNKPLEVTVNSGGVVFFALFSQLGYDDNFPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNSSMEWLQIKEAAEKARDVACLEGDEVGEMTCSELLEALELSRCLFLMSYVHGSSLLESSSAFESREVAEKLAAAIGRILLLDLVIRNEDRLPCRLLRWRGNSANLLFADRVTCASMNAFEEAFDSAIKRYRPKVVTMLQKERRATSVDSRLSSNSSLLLEASELCDIIESPKSSNLSVKSQISDDMMTCDFSIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSNLLHDITGGKLGFPSLADANSTTGIQFTDMTSIVHEFRYGFRAALRDLQGFHIFLLTLHQKLDNSLRAFMNIINKFPLGESDKEDSGVPESHSQVSATCHCLSPRGKERASNDSSVDFTDSAPRSSSLGNKESSDSTSPLSRDSSQGKLYRGSAEPIRSLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSHGVVDAYELKVRLEHILERIALISEAANTERPSSVTAALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDNEDSNISSIFEEACDFIDDIESKSGKVLVHCFEGRSRSATLVLAYLMLRKNYTLLKAWSALKRVHRRAQPNDGFAKILLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALRISRGGSVSPTQRQSLLILDE 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4465345 4473520 - MC01g0068 Mch1g0184 675076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0184 926 ProSitePatterns Tyrosine specific protein phosphatases active site. 786 796 IPR016130 GO:0016311(InterPro)
Mch1g0184 926 CDD DSP 700 837 - -
Mch1g0184 926 Pfam Dual specificity phosphatase, catalytic domain 711 840 IPR000340 GO:0016311(InterPro)
Mch1g0184 926 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 14 925 IPR035010 GO:0004721(InterPro)|GO:0009737(InterPro)|GO:0043622(InterPro)
Mch1g0184 926 ProSiteProfiles Dual specificity protein phosphatase domain profile. 699 844 IPR020422 GO:0006470(InterPro)
Mch1g0184 926 MobiDBLite consensus disorder prediction 570 603 - -
Mch1g0184 926 MobiDBLite consensus disorder prediction 536 607 - -
Mch1g0184 926 SMART dsp_5 699 841 IPR020422 GO:0006470(InterPro)
Mch1g0184 926 Pfam Actin-fragmin kinase, catalytic 110 423 IPR015275 -
Mch1g0184 926 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 699 843 IPR029021 -
Mch1g0184 926 FunFam Dual specificity protein phosphatase PHS1 671 845 - -
Mch1g0184 926 SUPERFAMILY Protein kinase-like (PK-like) 61 437 IPR011009 -
Mch1g0184 926 Gene3D - 278 520 IPR036940 -
Mch1g0184 926 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 771 820 IPR000387 GO:0016311(InterPro)
Mch1g0184 926 Gene3D Protein tyrosine phosphatase superfamily 682 853 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0184 K14165 - - csv:101220184 1533.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0184 Mch-Chr1:4465345 Mch6g0016 Mch-Chr6:129297 2.02E-17 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch11g1552 . 86 376 Protein tyrosine phosphatase (PTP) family AT1G71860 66.2 1.7e-111 399.4
Mch1g0184 . 21 920 Protein tyrosine phosphatase (PTP) family AT5G23720 64.5 0.0e+00 1077.4
Mch4g0086 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 1.2e-71 266.2
Mch9g1831 . 96 373 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 5.3e-114 407.5
Mch9g1401 . 20 277 Protein tyrosine phosphatase (PTP) family AT3G10940 66.4 2.7e-102 368.6
Mch8g1510 . 254 702 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 1.8e-201 698.7
Mch2g0685 . 9 231 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 9.5e-78 287.0
Mch4g0093 . 10 243 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 9.8e-75 276.9
Mch8g3193 . 17 264 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.2e-80 297.0
Mch8g3193 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 8.2e-47 183.7
Mch2g0685 . 43 230 Protein tyrosine phosphatase (PTP) family AT4G03960 68.6 2.1e-72 268.9
Mch4g0093 . 43 242 Protein tyrosine phosphatase (PTP) family AT4G03960 62.5 4.0e-68 254.6
Mch6g1423 . 5 185 Protein tyrosine phosphatase (PTP) family AT4G03960 53.6 4.3e-54 208.0
Mch6g1423 . 7 216 Protein tyrosine phosphatase (PTP) family AT3G02800 67.0 4.0e-79 291.2
Mch2g0685 . 40 224 Protein tyrosine phosphatase (PTP) family AT3G02800 55.1 2.2e-53 205.7
Mch9g1591 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 66.7 1.8e-63 241.1
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g0722 . 38 619 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.3e-221 763.8
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G19420 61.8 1.7e-197 686.0
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch10g1638 . 10 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.9 9.2e-112 400.2