Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0297 ATGGAGGAAGACGATTCTCTTAATCCCACTGCTCCGGGTTTCATTCCGATGAATCCGATTGTTGTTGAGCAACATGCCAATCCATATTTTCTTCATCACTCTGATAACACCAGCCTAGTTTTGGTTTCTGATCTCTTGACTGATGAAAATTACACCTCGTGGAGTCGATCTATAGTTATTGCTCTTACAGTAAAAAACAAAATAGGTTTTGTTGATGGTTCGATTTCTCGTCCCACTGATGGTAGGCTGCATTCTTGGATTATATGCAACAATGTCGTAATCTCATGGATTTTCAATTCATTGTCCAAGAAAATCTCTGCTAGTGTGCTCTTCTCTGATTCTGCTCATGAAATTTGGCTAGATCTCAAAGAGCGATTTCAACGCCAGAATCGTCCCCGCATATTTCAACTCCGCAGAGAATTATCGAATCTTACTCAAGATCAACTCTCCGTCACTGCTTATTTCACTCGATTGAAGACACTTTGGTCTGAATTAGCTTTGTATCGACCTGCGTGTTCTTGTGGTCGGTGCTCCTATGGTGGCGTGAAATCTATTGAAGCGCATTATCAGCAAGAGTATGTTATGGCTTTTCTGATGGGCTTAAACGTGTCTTTCAGCCAAATTAGAGCTCAACTTCTTCTGATGGAGCCCGCGCCTACAATCAACCGTGCCTTTGCCCTAGTTGCACAGGAAATGCAGCAACGATCTATTTCGTTGCCCTCTGTTACTTCACCTACTGCTTCGGCTGTACGCGCAACTTCAAATTCCTCGAATTCTCGCTTGAATTCTTCATCGGCATCTCACATGAAACGAAAGGATAAATCGCTATGCACTCATTGTGGTATCTACGGTCATACCGTCGATAAATGCTATAAGTTACATGAATATCCCCCTGGATATCGTTCATCTGTGCATAAAACCACATCTTCGAATGCCACATCTTCACGGTCTGCTGAAGCTCCGTCCAAATCTGTATCGGCTACACCTTCAGGGATTTCTAATTCTCTTGCTACACTTACTGCTGATCAATGCCAGAGGCTTCTCACTTTGCTTCAATCACACTTAACCACTACCAAAACTGCTTCTGATAATGATTCTGGAACTTCTCATGTGGCAGAAACACAGTTCGGAAAAACAATCAAGAGATTCAGGTCTGATAAAGCTCCGGAGTTATCTTTTGTTGAGTTTTTTCACTCCAAAGGGGTTCTTCATCAGTTTTCTTGTGTAGGATGCCCTGAGCAAAATTCAGTCGTTGAAAGAAAACACCAGCACCTTCTTAATGTAGCCCGTTCCTTGTATTTTCAGTCTCGGGTTCCAACTGCTTTCTGGGGTGAATGTGTGCTTACTGCTGCTTACTTAATTAATCGCACTCCAACGCCTGTTCTTGACTGGAATACTCCTTATGCTCGTTTATATGGACACTCAGCGGATTATTCTTCTTTAAAAGTGTTTGGCTGCCTATGCTTCGTGTCTACCTCTCCAGTCAATCGTTCTAAATTTCATCCACGAGCCCTTACATCAGTTTTTGTTGGATATCCACCGGGGATGAAAGGATATAAGCTTTATGACATTGAGAATAAGCGGTTTTTTGTGTCCAGAGATGTGATTTTCCATGAATCCATATTTCCATTTCATACAGTATCAGTTAACTCTCCGATTGTTGATCCTTTTCCGGGTGTGGTGATACCAAAGTCTTATGATTTGGTTGATACTTCTTCTGGTGCACCTGATGATCATCACAATTATGCTACTGGTTCTGCTGTTTCTCCTACTAGTGCTGATATTTCACCTACAGTGGTTATACCTGATGGTTCTCCTATTATGGTTGCTAATGAATCTGATGCCAATGGTTCTCCTATTCTGGTTGCTAATGAGTCTAATATTATGCCTAATATTGTTGAGAACTCTTTGATAAATCCATTGGACACTGATGTTGCCAATGTTGATTCTGCTGTCGTTGTTCCATGTTCTGATCCTTCAGACTCTGTTACTCTTCGACGATCATCTCGTGTAGCACAACGACCGTCCTATTTACGAGACTATCATTGTGGACTTATTCAAGCCACTGATCACTCTGCTTCTTCAGTTTTTTATCCCTTGCAGAAATATTTGGACTACAACAACTTGTCTGCCTCTTACAAAGAGTTTGTCCTAAGTGTATCTTGTGATTATGAGCCTCAATTCTATCACCAAGCTGTCCCATTTTCCCATTGGCGAGAGGCGATGCGTGCTGAATTACATGCTATGGAGGCTAATCATACTTGGTCCGTGGTACCTCTTCCTTATGAACATCATTCCATTGGGTGCAAGTGGATATACAAGGTCAAACATAAGTCTGATGGCTCTATTGAGCGTTACAAAGCCCGGTTAGTCGCCAAAGGCTATACTCAACAGGAAGGTCTCGATTATATTGAAACATTTTCTCCAGTAGTAAAGTTAGTTACCGTTAAGGTTTTGCTTACCCTTGCTGTTTCTTTCAACTGGACTCTTGTCCAACTTGATGTTAACAATGCATTCTTGCATGGCGACTTATTTGAGGAAGTATATATGGATCTTCCTCTAGGCTATAAACATGGAGTTGTTCCTAAACAGGGGAGAAACTTGTCTGCCGCTTCATAA 2619 41.73 MEEDDSLNPTAPGFIPMNPIVVEQHANPYFLHHSDNTSLVLVSDLLTDENYTSWSRSIVIALTVKNKIGFVDGSISRPTDGRLHSWIICNNVVISWIFNSLSKKISASVLFSDSAHEIWLDLKERFQRQNRPRIFQLRRELSNLTQDQLSVTAYFTRLKTLWSELALYRPACSCGRCSYGGVKSIEAHYQQEYVMAFLMGLNVSFSQIRAQLLLMEPAPTINRAFALVAQEMQQRSISLPSVTSPTASAVRATSNSSNSRLNSSSASHMKRKDKSLCTHCGIYGHTVDKCYKLHEYPPGYRSSVHKTTSSNATSSRSAEAPSKSVSATPSGISNSLATLTADQCQRLLTLLQSHLTTTKTASDNDSGTSHVAETQFGKTIKRFRSDKAPELSFVEFFHSKGVLHQFSCVGCPEQNSVVERKHQHLLNVARSLYFQSRVPTAFWGECVLTAAYLINRTPTPVLDWNTPYARLYGHSADYSSLKVFGCLCFVSTSPVNRSKFHPRALTSVFVGYPPGMKGYKLYDIENKRFFVSRDVIFHESIFPFHTVSVNSPIVDPFPGVVIPKSYDLVDTSSGAPDDHHNYATGSAVSPTSADISPTVVIPDGSPIMVANESDANGSPILVANESNIMPNIVENSLINPLDTDVANVDSAVVVPCSDPSDSVTLRRSSRVAQRPSYLRDYHCGLIQATDHSASSVFYPLQKYLDYNNLSASYKEFVLSVSCDYEPQFYHQAVPFSHWREAMRAELHAMEANHTWSVVPLPYEHHSIGCKWIYKVKHKSDGSIERYKARLVAKGYTQQEGLDYIETFSPVVKLVTVKVLLTLAVSFNWTLVQLDVNNAFLHGDLFEEVYMDLPLGYKHGVVPKQGRNLSAAS 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6344651 6349506 - MC01g_new0175 Mch1g0297 675189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0297 872 MobiDBLite consensus disorder prediction 302 330 - -
Mch1g0297 872 MobiDBLite consensus disorder prediction 248 268 - -
Mch1g0297 872 Gene3D - 335 483 IPR036397 GO:0003676(InterPro)
Mch1g0297 872 Pfam gag-polypeptide of LTR copia-type 32 78 IPR029472 -
Mch1g0297 872 PANTHER TRANSPOSASE, PUTATIVE-RELATED 371 843 - -
Mch1g0297 872 SUPERFAMILY Ribonuclease H-like 370 469 IPR012337 -
Mch1g0297 872 ProSiteProfiles Integrase catalytic domain profile. 317 475 IPR001584 GO:0015074(InterPro)
Mch1g0297 872 MobiDBLite consensus disorder prediction 248 265 - -
Mch1g0297 872 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 752 858 IPR013103 -
Mch1g0297 872 Pfam Retrotransposon gag protein 96 201 IPR005162 -
Mch1g0297 872 MobiDBLite consensus disorder prediction 301 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0003 Mch-Chr11:24569 Mch1g0297 Mch-Chr1:6344651 2.11E-23 dispersed
Mch11g1876 Mch-Chr11:18589329 Mch1g0297 Mch-Chr1:6344651 1.30E-47 dispersed
Mch1g0297 Mch-Chr1:6344651 Mch2g1093 Mch-Chr2:7387860 1.01E-178 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0297 - - - 0.0