Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0308 ATGTTGTCAAAGTCCGATAACAAACCAGACGGATCTGAGATGTTTAACAAACCGGAAGACGAATCTCTCATCGGAGCAACGAACACCGCTCCGAATTTCGTAAAAAACCCGCCCGATTCCCTCCGACGAATCGATCAGATCTCCAAAAACGGAGTAAACTCCGGCAACGCGGCGATGGCGGAGGTTTCATACCCCGGACACGGCCAGGCGCTCGGGGGATCGATCGCGCCGCTACCGACGACGACCGCGAAGAACAGCAGCAGCAGCAACAACAATACAACGAAGAGCGGCGGCGGGGAGGGGGGAGGAGGGAACCACTACCGTTGCGACAGCATGGAGACGCCGGGGGTGGTGATAAAGCCGCACACAGGCGGGGACGCGCGGTGGGACGCGGTGAACATGGTGTCGAAAGGGGGGTCGCTGAACCTGAGCCACTTCCGGCTGCTGAAGAGGCTGGGGTACGGCGACATTGGGAGCGTGTACCTGGTGGAGCTGAGGGGGACGGAGACGTTCTTCGCCATGAAAGTGATGGACAAAGCTTCGCTGGCCAGCAGGAACAAGCTGCTCAGGGCGCAGACTGAGAGGGAGATTTTGGGGCTTCTGGATCATCCGTTTTTGCCAACTCTCTATTCATATTTCGAGACTGATAAGTTCTATTGCTTGGTTATGGAGTTTTGTAGCGGTGGGAATCTTCACTCCCTTCGCCAGAAGCAGCCCAACAAATACTTTACAGAAGAAGCTGCCAGGTTCTATGCATCAGAGGTTCTGTTAGCCCTGGAATATCTGCACATGTTAGGCATAGTGTACAGAGATTTGAAGCCAGAGAATCTTCTAATCCGCGACGAAGGCCACATCATGCTCTCCGATTTCGACCTCTCTCTCCGCTGCTCCGTCAGCCCCACCCTCGTCAAATCCTCCTCCGTCAACGTCAACGGCACCTCCAACGCCGGCAGCGGCGGCGGAGGCGGCGGCGGCGGCATCCTCGACGACGAGTTCGCCGTCCACGGCTGTATGCAGCCCTCCAACTTCCTCCCCCGCATCCTCCCCTCCAAGAAGAATCGCAAGTCCAAGTCCGACTTCGGCCTCTTCGTCGGCGGCGCCCTCCCGGAGCTCATGGCCGAGCCGACCAACGTCAGATCCATGTCCTTCGTCGGCACCCACGAGTACTTGGCGCCGGAGATCATCCAGGGCGAGGGCCACGGCAGCGCCGTCGACTGGTGGACCTTCGGGATCTTCCTCTACGAACTCCTCCACGGAACCACGCCCTTCAAGGGATCCGGAAACAGAGCCACTCTGTTCAACGTCGTCGGCCAGCCGCTCAGATTCCCGGAGACGCCGCAAGTCAGCCTGGCGGCGCGTGATCTCATCAGAGGGCTGCTCGTGAAGGAGCCGCACAAGCGAATCGCGTACAGAAGAGGCGCCACCGAGATCAAGCAGCACCCCTTCTTCGACGGAGTCAATTGGGCGCTCGTCAGAAGCGCCATGCCGCCGCACGTGCCGGAGCCGGTCGATTTCTCGCAGTTCGCTAGTAAGAAGACGCCGCCCTCCGCCGCCGCGTCCGCCGCCGTTGAGGAGAAGAAGACGATGGACGTTGGGAGCGGGGGAATCGCGGCCGCGGCGGACAATTCTTCGCCTTCTGCTGGTAGCGATCCCAATTATGTGGATTTTGAGTACTTCTAG 1680 59.29 MLSKSDNKPDGSEMFNKPEDESLIGATNTAPNFVKNPPDSLRRIDQISKNGVNSGNAAMAEVSYPGHGQALGGSIAPLPTTTAKNSSSSNNNTTKSGGGEGGGGNHYRCDSMETPGVVIKPHTGGDARWDAVNMVSKGGSLNLSHFRLLKRLGYGDIGSVYLVELRGTETFFAMKVMDKASLASRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGNLHSLRQKQPNKYFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLIRDEGHIMLSDFDLSLRCSVSPTLVKSSSVNVNGTSNAGSGGGGGGGGILDDEFAVHGCMQPSNFLPRILPSKKNRKSKSDFGLFVGGALPELMAEPTNVRSMSFVGTHEYLAPEIIQGEGHGSAVDWWTFGIFLYELLHGTTPFKGSGNRATLFNVVGQPLRFPETPQVSLAARDLIRGLLVKEPHKRIAYRRGATEIKQHPFFDGVNWALVRSAMPPHVPEPVDFSQFASKKTPPSAAASAAVEEKKTMDVGSGGIAAAADNSSPSAGSDPNYVDFEYF 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6554127 6556946 - MC01g0128 Mch1g0308 675200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0308 559 Gene3D Transferase(Phosphotransferase) domain 1 378 501 - -
Mch1g0308 559 Gene3D Phosphorylase Kinase; domain 1 144 229 - -
Mch1g0308 559 FunFam Serine/threonine-protein kinase AGC1-5 144 229 - -
Mch1g0308 559 Gene3D Transferase(Phosphotransferase) domain 1 230 299 - -
Mch1g0308 559 ProSiteProfiles Protein kinase domain profile. 146 483 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0308 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g0308 559 MobiDBLite consensus disorder prediction 70 116 - -
Mch1g0308 559 MobiDBLite consensus disorder prediction 534 554 - -
Mch1g0308 559 CDD STKc_phototropin_like 144 504 - -
Mch1g0308 559 PANTHER FLIPPASE KINASE 1-RELATED 93 512 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Mch1g0308 559 Gene3D Phosphorylase Kinase; domain 1 502 512 - -
Mch1g0308 559 MobiDBLite consensus disorder prediction 75 99 - -
Mch1g0308 559 FunFam serine/threonine-protein kinase D6PK-like 230 297 - -
Mch1g0308 559 Pfam Protein kinase domain 147 300 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0308 559 Pfam Protein kinase domain 377 483 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0308 559 SUPERFAMILY Protein kinase-like (PK-like) 143 515 IPR011009 -
Mch1g0308 559 FunFam Serine/threonine-protein kinase AGC1-7 376 501 - -
Mch1g0308 559 SMART serkin_6 146 483 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0308 559 MobiDBLite consensus disorder prediction 1 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0308 Mch-Chr1:6554127 Mch8g1468 Mch-Chr8:10997803 1.47E-181 dispersed
Mch1g0308 Mch-Chr1:6554127 Mch3g0725 Mch-Chr3:11538666 9.67E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77093 PF00069 Pkinase 1.60E-37 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0308 - - - 0.0