Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0310 ATGGGAGACGGCAACAACACCAACAGAGGCCTCATCTCGGCCAACGCTGCCAACCGGAACACCAACAACGGCGGCAGCCACCACAAGAAGCCGGAGTGGCTGCAGCAGTACGATCTGATTGGGAAGATCGGAGAGGGAACCTATGGCCTTGTATTTCTCGCTAAAATCAAACCCCCTTCCCCCAGCCGCGGGAAGTCCATTGCCATCAAGAAGTTCAAGCAATCCAAGGACGGTGATGGAGTCTCCCCTACTGCCATCCGCGAAATTATGTTACTGCGGGAAATTTCACACGAGAATGTCGTCAAGCTTGTAAATGTTCATATTAATCATGCAGATATGTCGCTGTATCTAGCTTTTGACTACGCTGAACATGACCTCTACGAAATCATCAGGCATCATAGGGACAAGGCTAACCATCCCATTAATCAGTACACCGTTAAATCCTTGCTCTGGCAACTGTTCAATGGATTGAATTATCTCCACAGTAATTGGATTATTCATCGTGATTTGAAGCCATCAAATATTTTGGTTATGGGCGATGGAGAAGAACAGGGAGTGGTTAAGATAGCTGATTTTGGACTTGCAAGAATATACCAAGCTCCCTTGAAGCCATTATTTGAAAATGGAGTTGTTGTGACCATTTGGTATCGTGCACCTGAGCTTCTCCTTGGAGCAAAGCACTATACTAGTGCTGTTGGTAGTAGACTGGGATATATTTTTATCCTCAGTAAAGAAGACGATACTTCCTTTATAAAGAAAGATATGTGGGCTGTTGGATGCATTTTTGCTGAGCTTTTGACATTGAAGCCATTATTTCAAGGGCAAGAAGTCAAAGGGACTCCAAATCCTTTCCAGCTTGATCAACTTGACAAGATTTTTAAGGTTTTAGGCCATCCCACACTAGAGAAGTGGCCAACACTTGCGAATCTTCCACATTGGCAACAAGATCTACAGCACATACAGGGACATAAATATGACAATGCTGGATTGTATAACGTTGTCCACCTTTCTCCAAAAAGTCCTGCATATGATCTTCTATCCAAAATGCTCGAGTATGATCCTCGAAAACGTATAACAGCAGCCCAAGCTCTTGAGCACGAGTATTTTCGTTTAGAGCCTCTGCCAGGATACAATACTCTGGTGCCAGTCCAACCTGGAGAGAAGGTCATTAATTATCCAACTCGCCCCGTGGACACAACAACGGACTTTGAGGGAACAACTAACCTTCAACCCTCACAAACGGTACCATCTGGAAATGCAGTTTCTGTGCAAGGTGCTCATGTGGTGGCAGGCAGATCTGTCCCCCGGCCAATGGCAGGAGTTGGCATGCCAAGGATGCCACCTCAGGGTATGGCTGCTTATGGTCTTGCATCTCAGGCTGGGATTGGTGGCAGTATGAATCCTGGTGGCAGTATGAATCCTGGTGGAATCCCGATGCAGCGAGGTGTTTCTGCCCAAGCTCATCAGCAACAGTTAAGGAGAAAAGATCCAGGAATGGGAATGCCGGGTTATCCTCAGCAGAAACAACAAAGACGCTACTGA 1542 46.24 MGDGNNTNRGLISANAANRNTNNGGSHHKKPEWLQQYDLIGKIGEGTYGLVFLAKIKPPSPSRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKANHPINQYTVKSLLWQLFNGLNYLHSNWIIHRDLKPSNILVMGDGEEQGVVKIADFGLARIYQAPLKPLFENGVVVTIWYRAPELLLGAKHYTSAVGSRLGYIFILSKEDDTSFIKKDMWAVGCIFAELLTLKPLFQGQEVKGTPNPFQLDQLDKIFKVLGHPTLEKWPTLANLPHWQQDLQHIQGHKYDNAGLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRLEPLPGYNTLVPVQPGEKVINYPTRPVDTTTDFEGTTNLQPSQTVPSGNAVSVQGAHVVAGRSVPRPMAGVGMPRMPPQGMAAYGLASQAGIGGSMNPGGSMNPGGIPMQRGVSAQAHQQQLRRKDPGMGMPGYPQQKQQRRY 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6627361 6643858 + MC01g0129 Mch1g0310 675202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0310 513 SUPERFAMILY Protein kinase-like (PK-like) 32 370 IPR011009 -
Mch1g0310 513 MobiDBLite consensus disorder prediction 1 29 - -
Mch1g0310 513 Gene3D Phosphorylase Kinase; domain 1 22 119 - -
Mch1g0310 513 Pfam Protein kinase domain 252 369 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0310 513 Pfam Protein kinase domain 37 232 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0310 513 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch1g0310 513 FunFam CMGC/CDK/CDK8 protein kinase 123 376 - -
Mch1g0310 513 ProSitePatterns Protein kinases ATP-binding region signature. 43 71 IPR017441 GO:0005524(InterPro)
Mch1g0310 513 Gene3D Transferase(Phosphotransferase) domain 1 120 380 - -
Mch1g0310 513 MobiDBLite consensus disorder prediction 1 30 - -
Mch1g0310 513 MobiDBLite consensus disorder prediction 465 513 - -
Mch1g0310 513 ProSiteProfiles Protein kinase domain profile. 37 369 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0310 513 FunFam Cyclin-dependent kinase e-1 25 121 - -
Mch1g0310 513 SMART serkin_6 37 369 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0310 513 CDD STKc_CDK8_like 36 369 - -
Mch1g0310 513 PANTHER CELL DIVISION PROTEIN KINASE 36 369 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0016592(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0310 Mch-Chr1:6627361 Mch9g2347 Mch-Chr9:23460276 3.55E-67 dispersed
Mch1g0310 Mch-Chr1:6627361 Mch8g0091 Mch-Chr8:506886 3.84E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77094 PF00069 Pkinase 3.50E-43 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0310 K02208 - csv:101203984 896.345