Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0314 ATGGCTCCTGGAACCAGTGCTTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAGTATCTAAATCAGAGAGTAATTCTAATTCTAATTCTAATTCTAATTCTGCATCGACGAAAGTTCTACTTGGCTTGGGTGGGAAACTTGGAGTTTATTCAACCAATGGAGTGCAGGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCGAATGGCCACACATTGTGTTCAAACTGCAAGATCAGAGTTAGCAACTGTTGCCCGACCTGTCGTCATGAGCTTGGCAATATAAGGTGCTTGGCGTTGGAGAAGGTAGCTGAATCATTAGAGATCCCCTGCAGATACCACAGTTTGGGTTGTCTAGATATTTTTCCTTACTATAGTAAGCTGAAGCACGAGCAGCACTGTCGATTCCGTCCTTACAATTGCCCTTATGCTGGATCCGAGTGCTCGGTCTCAGGTGATATCCCGTCTCTTGTTACGCATCTCAAAGATGATCATAAGGTTGACATGCATGATGGGTGTACCTTCAATCATCGCTATGTGAAATCAAATCCACACGAAGTCGAAAATGCCACATGGATGCTAACGGTTTTCAACTGTTTTGGGAGGCAATTCTGCTTGCATTTCGAGGCGTTCCAGCTTGGAATGGCACCTGTTTACATGGCATTCCTACGATTCATGGGCGACGATAATGAAGCAAAAAAGTTCAGCTACAGTTTGGAAGTGGGTGGCAATGGCCGTAAACTGATATGGCACGGAATTCCTAGGGGCATCCGTGACAGTCACCGAAAAGTCCGCGACAGTCAAGATGGTCTCATCATTCAAAGAAACCTGGCGCTGTATTTTTCGGGAGGGGAAAGGCAAGAGCTGAAGCTGAGAATCACGGGTCGAATATGGAAAGAAGAATGA 948 45.46 MAPGTSACKEVVDSHPSVSGHDIAVSKSESNSNSNSNSNSASTKVLLGLGGKLGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNCCPTCRHELGNIRCLALEKVAESLEIPCRYHSLGCLDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVSGDIPSLVTHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWHGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6730435 6736621 - MC01g0132 Mch1g0314 675206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0314 315 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 30 310 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Mch1g0314 315 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 67 102 IPR049548 -
Mch1g0314 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 119 IPR013083 -
Mch1g0314 315 MobiDBLite consensus disorder prediction 11 40 - -
Mch1g0314 315 CDD Sina 181 309 - -
Mch1g0314 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 173 IPR013083 -
Mch1g0314 315 SUPERFAMILY RING/U-box 61 108 - -
Mch1g0314 315 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 174 308 IPR008974 GO:0005515(InterPro)
Mch1g0314 315 SUPERFAMILY TRAF domain-like 120 312 - -
Mch1g0314 315 ProSiteProfiles Zinc finger RING-type profile. 67 103 IPR001841 -
Mch1g0314 315 ProSiteProfiles Zinc finger SIAH-type profile. 120 180 IPR013010 GO:0008270(InterPro)
Mch1g0314 315 MobiDBLite consensus disorder prediction 21 40 - -
Mch1g0314 315 FunFam E3 ubiquitin-protein ligase SINAT5-like 176 308 - -
Mch1g0314 315 Pfam Sina, TRAF-like domain 211 308 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Mch1g0314 315 CDD RING-HC_SIAHs 65 103 - -
Mch1g0314 315 FunFam E3 ubiquitin-protein ligase SINAT3 119 175 - -
Mch1g0314 315 Pfam Sina, zinc finger 116 191 - -
Mch1g0314 315 FunFam E3 ubiquitin-protein ligase SINAT5-like 14 118 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0314 Mch-Chr1:6730435 Mch9g1742 Mch-Chr9:19389569 7.86E-170 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0314 K04506 - rcu:8260973 564.303