Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch1g0331 | ATGTATGTATGGTGCATTCTCTCTCCTCTCCTTTCTTCAACAATTCTCTCTCCTAAAGAAATCTATCATCTTCTTCTTCAATTTCCCACTCCCATGGCTGACCCATGTCCCAACTCATTCCCCAACTCATTCCCCAATGTTCTAAAATTCAACTCCCTCCGCCACCATTTCCCACCCCTTCCTCCCTCCTTCTCCCCGCAGCGGAACATGTCTCCTCATAATCATTACTCGTATTCCTATCCGACCCCGCCCCCGCCTTCCTCTCCGCCGCTTCGGGAGGCCTTGCCGCTTCTCGGGGGCCTGATATCCCCACCAGAGCAAGAGCAGAAAGAGGAAGAGGACGACGGGGGCGGCGGCAGGGGGTGCGACGGGTCGGTCACGATCGCGTTGCACATAGGGCTACCGAGCCCTAGCGCGGCGGAGATGGCGACGGTGATGTCGGGTTCGTCGTCGGAGATTGATCATGGTGATGTAGATCATGGTAACAATCATGACTGTGGGCAGTCCACAAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTTCCCAAATCCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAATAATATGCAGATGCATATGTGGGGGCATGGCTCACAGTACAGGAAGGGGCCAGAGTCGCTGAGGGGGACTCAGCCAACGGGGATGCTGCGGCTGCCGTGCTACTGCTGCGCGCCAGGGTGTCGCAACAACATAGACCACCCACGAGCCAAGCCGCTCAAGGACTTTCGAACCCTCCAGACTCACTACAAGCGCAAGCACGGCCTGAAGCCCTTCACCTGCCGAAAGTGTGGCAAGGCCTTCGCTGTCCGCGGCGACTGGCGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGCGTCTGTGGCTCCGACTTCAAGCACAAGCGCTCCCTCAAGGACCACGTCAAGGCCTTTGGCAACCACCACGCTGCGTATGGTGCTGGTGCCGATGAGGATGACGAGCCTGCCTCTGAGGTCGAGCAGGACAACGACGATTGA | 1056 | 55.87 | MYVWCILSPLLSSTILSPKEIYHLLLQFPTPMADPCPNSFPNSFPNVLKFNSLRHHFPPLPPSFSPQRNMSPHNHYSYSYPTPPPPSSPPLREALPLLGGLISPPEQEQKEEEDDGGGGRGCDGSVTIALHIGLPSPSAAEMATVMSGSSSEIDHGDVDHGNNHDCGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFTCRKCGKAFAVRGDWRTHEKNCGKLWYCVCGSDFKHKRSLKDHVKAFGNHHAAYGAGADEDDEPASEVEQDNDD | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7024604 | 7027583 | + | MC01g0142 | Mch1g0331 | 675223 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch1g0331 | 351 | Gene3D | Classic Zinc Finger | 254 | 331 | - | - | |
Mch1g0331 | 351 | MobiDBLite | consensus disorder prediction | 331 | 351 | - | - | |
Mch1g0331 | 351 | SUPERFAMILY | beta-beta-alpha zinc fingers | 259 | 297 | IPR036236 | - | |
Mch1g0331 | 351 | Gene3D | Classic Zinc Finger | 192 | 215 | - | - | |
Mch1g0331 | 351 | MobiDBLite | consensus disorder prediction | 337 | 351 | - | - | |
Mch1g0331 | 351 | SMART | c2h2final6 | 303 | 327 | IPR013087 | - | |
Mch1g0331 | 351 | SMART | c2h2final6 | 277 | 297 | IPR013087 | - | |
Mch1g0331 | 351 | SMART | c2h2final6 | 193 | 215 | IPR013087 | - | |
Mch1g0331 | 351 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 276 | 300 | - | - | |
Mch1g0331 | 351 | SUPERFAMILY | beta-beta-alpha zinc fingers | 164 | 215 | IPR036236 | - | |
Mch1g0331 | 351 | MobiDBLite | consensus disorder prediction | 78 | 92 | - | - | |
Mch1g0331 | 351 | MobiDBLite | consensus disorder prediction | 61 | 124 | - | - | |
Mch1g0331 | 351 | FunFam | Zinc finger protein WIP2 | 246 | 328 | - | - | |
Mch1g0331 | 351 | FunFam | zinc finger protein WIP2-like | 192 | 215 | - | - | |
Mch1g0331 | 351 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 195 | 215 | IPR013087 | - | |
Mch1g0331 | 351 | PANTHER | ZINC FINGER PROTEIN WIP2 | 80 | 349 | IPR043584 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER) | |
Mch1g0331 | 351 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 277 | 297 | IPR013087 | - | |
Mch1g0331 | 351 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 193 | 220 | IPR013087 | - | |
Mch1g0331 | 351 | Pfam | Zinc finger, C2H2 type | 193 | 212 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g0331 | Mch-Chr1:7024604 | Mch2g0130 | Mch-Chr2:990887 | 2.51E-118 | dispersed | |
Mch1g0331 | Mch-Chr1:7024604 | Mch5g1409 | Mch-Chr5:15143728 | 8.16E-135 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42664 | None | None | None | None | Mch | TF |
Pathway information
