Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0331 ATGTATGTATGGTGCATTCTCTCTCCTCTCCTTTCTTCAACAATTCTCTCTCCTAAAGAAATCTATCATCTTCTTCTTCAATTTCCCACTCCCATGGCTGACCCATGTCCCAACTCATTCCCCAACTCATTCCCCAATGTTCTAAAATTCAACTCCCTCCGCCACCATTTCCCACCCCTTCCTCCCTCCTTCTCCCCGCAGCGGAACATGTCTCCTCATAATCATTACTCGTATTCCTATCCGACCCCGCCCCCGCCTTCCTCTCCGCCGCTTCGGGAGGCCTTGCCGCTTCTCGGGGGCCTGATATCCCCACCAGAGCAAGAGCAGAAAGAGGAAGAGGACGACGGGGGCGGCGGCAGGGGGTGCGACGGGTCGGTCACGATCGCGTTGCACATAGGGCTACCGAGCCCTAGCGCGGCGGAGATGGCGACGGTGATGTCGGGTTCGTCGTCGGAGATTGATCATGGTGATGTAGATCATGGTAACAATCATGACTGTGGGCAGTCCACAAAAACCCTAATAAAGGGGCAGTACTGGATCCCTACTCCTTCCCAAATCCTCATTGGTCCTACTCAATTCTCTTGCCCTGTTTGCTTCAAAACCTTCAATAGATACAATAATATGCAGATGCATATGTGGGGGCATGGCTCACAGTACAGGAAGGGGCCAGAGTCGCTGAGGGGGACTCAGCCAACGGGGATGCTGCGGCTGCCGTGCTACTGCTGCGCGCCAGGGTGTCGCAACAACATAGACCACCCACGAGCCAAGCCGCTCAAGGACTTTCGAACCCTCCAGACTCACTACAAGCGCAAGCACGGCCTGAAGCCCTTCACCTGCCGAAAGTGTGGCAAGGCCTTCGCTGTCCGCGGCGACTGGCGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGCGTCTGTGGCTCCGACTTCAAGCACAAGCGCTCCCTCAAGGACCACGTCAAGGCCTTTGGCAACCACCACGCTGCGTATGGTGCTGGTGCCGATGAGGATGACGAGCCTGCCTCTGAGGTCGAGCAGGACAACGACGATTGA 1056 55.87 MYVWCILSPLLSSTILSPKEIYHLLLQFPTPMADPCPNSFPNSFPNVLKFNSLRHHFPPLPPSFSPQRNMSPHNHYSYSYPTPPPPSSPPLREALPLLGGLISPPEQEQKEEEDDGGGGRGCDGSVTIALHIGLPSPSAAEMATVMSGSSSEIDHGDVDHGNNHDCGQSTKTLIKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGLKPFTCRKCGKAFAVRGDWRTHEKNCGKLWYCVCGSDFKHKRSLKDHVKAFGNHHAAYGAGADEDDEPASEVEQDNDD 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7024604 7027583 + MC01g0142 Mch1g0331 675223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0331 351 Gene3D Classic Zinc Finger 254 331 - -
Mch1g0331 351 MobiDBLite consensus disorder prediction 331 351 - -
Mch1g0331 351 SUPERFAMILY beta-beta-alpha zinc fingers 259 297 IPR036236 -
Mch1g0331 351 Gene3D Classic Zinc Finger 192 215 - -
Mch1g0331 351 MobiDBLite consensus disorder prediction 337 351 - -
Mch1g0331 351 SMART c2h2final6 303 327 IPR013087 -
Mch1g0331 351 SMART c2h2final6 277 297 IPR013087 -
Mch1g0331 351 SMART c2h2final6 193 215 IPR013087 -
Mch1g0331 351 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 276 300 - -
Mch1g0331 351 SUPERFAMILY beta-beta-alpha zinc fingers 164 215 IPR036236 -
Mch1g0331 351 MobiDBLite consensus disorder prediction 78 92 - -
Mch1g0331 351 MobiDBLite consensus disorder prediction 61 124 - -
Mch1g0331 351 FunFam Zinc finger protein WIP2 246 328 - -
Mch1g0331 351 FunFam zinc finger protein WIP2-like 192 215 - -
Mch1g0331 351 ProSitePatterns Zinc finger C2H2 type domain signature. 195 215 IPR013087 -
Mch1g0331 351 PANTHER ZINC FINGER PROTEIN WIP2 80 349 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Mch1g0331 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 277 297 IPR013087 -
Mch1g0331 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 220 IPR013087 -
Mch1g0331 351 Pfam Zinc finger, C2H2 type 193 212 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0331 Mch-Chr1:7024604 Mch2g0130 Mch-Chr2:990887 2.51E-118 dispersed
Mch1g0331 Mch-Chr1:7024604 Mch5g1409 Mch-Chr5:15143728 8.16E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42664 None None None None Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0331 - - - 0.0