Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch1g0344 ATGGCTACTCCCTTCAAACCGCCATTGTTTCTCTCTCTAACCTTCGCTTTCTTCCTCCTTGGCTCTTCTTCCTCTGAGGAATCCACCCTTTTGGCCTTCAAAGCTTCCATTAAAGACTCCACGAACTCTCTCTCCAACTGGGTCTCTTCTTCTCCCGCTCATTTCTGTAACTGGACTGGAATTTCTTGTGTGAACGATTCTTCGCCCTCGGTTTCCGCCATTGATCTTCAAGCATTGAGTCTCTCCGGTGAAATTTCCTCTTCCATTTGCGAACTCCCGCGTTTGGCCCATCTTAATCTCGCTGATAATCGGTTCAATCAGCCGATTCCTCTTCATCTCTCGCAGTGCACCTCGTTGGAGAGTTTGAATCTAAGCAATAATCTCATCTGGGGGACGATTCCGGATCAGATTTCTCTGTTTGGTTCGTTGAGAGTGCTTGATTTTGGGAAGAATCATATCGAAGGGAAGATTCCAGAGGGCATTGGGGCTTTGAGGAATCTCCAAACTCTCAATCTGAGGAGCAACTTGATTTCTGGTAGGGTTCCCTCTGTTGTCTTCCGTAATCTGACTGAGCTTCTTGTTGTTGATTTGTCTGAGAATTCTTATCTGTTGAGTGATATTCCTAGTGATATTGGGAAGCTTGAGAAACTTGAGGAGCTATGGCTTCAGAGCTCTGGTTTCTATGGGGAAATCCCTTCTTCTCTGTTGGGTTTGACAAGTTTGACTGTTTTGGATCTTTCACTGAATAATCTCACTGGGAAACTCCCTGATTTGTTGGGTTCTTCTCTGAAGAATGTGGTGTCTTTTGATGTTTCACAGAATAAGCTTATGGGGTCTTTCCCTAATGGCATTTGTAATGGAAAAAGCCTCATAAATCTTAGTCTTCATACCAATTTTTTCACTGGGACTTTGCCCAATTCCTTGAACCAATGCTTGAATCTTGAGAGGTTTCAAGTTCAGAACAATGGGTTTTCTGGGGATTTTCCTAAACCCTTGTGGTCTTTGCCAAAGATTAAGCTCATTAGAGCTGAAAACAATGGCTTCTCTGGTGAAGTTCCTGAGTCTATATCAATGGCTGCTCACCTCGAGCAAGTTCAGCTTGATAACAACAGCTTTTCCAGTAAAATACCTCAGGGTCTTGGGTCAATTCGTAGCTTATACCGTTTCTCTGCGTCGCTCAATCACTTTTATGGTGAATTGCCACAAAACTTCTGTGATTCACCATTGATGAGTATAATTAATCTGTCACACAATTCTCTTTTGGGTCGAATTCCTGAGCCGAAGAACTGCAAGAAACTTGTCTCTTTGTCCTTAGCAGGCAATAGTCTTACTGGAGAAATACCCGCTTCCCTTGTTGATCTACCTGTGTTGACTTATCTTGATCTTTCTAATAACAATCTCACTGGTTCAATCCCTCAAGGACTCGAGAACTTAAAGCTTGCGCTCTTCAACGTCTCATTCAATCAACTATCGGGTGCTGTTCCATTCTCTTTGATCTCAGGGCTACCAGCTTCGTTTCTGCAAGGAAATCCTGATCTTTGTGGCCCTGGCTTGAAAACTCCTTGTTCTCAAGGCCATCCCACACACCATATATCTGGACTTACCAAAATGACATGTGCCCTAATCTCTGTAGCTTGTGTTTTAGGAGTTATGAGCCTAGCTGCCGGGGTCATTCTGTATTACCGTTCTTACAAACTGAAATCCCGAGTCGATAACTGGCACTCGGTCTACTTCTACCCTCTTAGAATCAGTGAACATGAGTTGATCATGGGAATGAATGACAAAACTGCACAAGGATGTGGAGGAGCCTTTGGCCAAGTGTTCATTTTAAGTTTACCGAGCCGCGAACTGATCGCCATAAAGAAACTGGTTAACTTCGGGAGTCGTTCGTGGAAATCATTGAAAGCCGAGGTTAAGACGTTGGCCAAGATCAGGCACAAGAATATCATCAAGATTCTGGGGTTTTGTCATTCTGATGATGCCATTTTTCTGATTTATGAATTCTTACATAAGGGAAGCTTGGCTGACTTGATGAGCAGAAATGATTCTTGTCTGAATTGGAACGTGAGACTGAGAATTGCCATTGAGGTTGCTCAAGGACTGGCTTACATTCACAAGGATTACGTCCCACATTTACTTCATCGAAATGTCAAATCTTCGAACATTCTATTGGATGCCGACTTTGTCCCAAAACTCACGGATTTTGCTCTTCACCATATCGTTGGAGACTCTGCATTTCTCTCAACCGTGGATTCAGAATCTGCTCACTCCTGCTATATTGCACCAGAGTATAAATATAACAAGAAAGCAACAGAGCAAATAGATGTGTACAGCTTTGGTGTAGTGTTGCTAGAACTGGTGACTGGGCGACGAGCCGAGCGAATGCAATCATCGGACTCTCTCGACGTCGTCCAGTGGGTGAGAAGGAAGGTCAACATAGCCAATGGAGCTCCTCAAGTCTTGGACCCAAGCGTCCCGGAGCCTTCCCAACAACAGATGCTGGAAGCACTGGACATTGCCCTCCAGTGCACTTCTATGATGCCCGAAAAACGACCGTCGACGCTGGAAGTTGCCAAGGCACTTCAGCTAATCAGCTCGACAACGAACCTCCACGACGCAGCCTGCTCGGTTGCAGAGGATGGTTCGGTTCCGAGCTGA 2658 44.73 MATPFKPPLFLSLTFAFFLLGSSSSEESTLLAFKASIKDSTNSLSNWVSSSPAHFCNWTGISCVNDSSPSVSAIDLQALSLSGEISSSICELPRLAHLNLADNRFNQPIPLHLSQCTSLESLNLSNNLIWGTIPDQISLFGSLRVLDFGKNHIEGKIPEGIGALRNLQTLNLRSNLISGRVPSVVFRNLTELLVVDLSENSYLLSDIPSDIGKLEKLEELWLQSSGFYGEIPSSLLGLTSLTVLDLSLNNLTGKLPDLLGSSLKNVVSFDVSQNKLMGSFPNGICNGKSLINLSLHTNFFTGTLPNSLNQCLNLERFQVQNNGFSGDFPKPLWSLPKIKLIRAENNGFSGEVPESISMAAHLEQVQLDNNSFSSKIPQGLGSIRSLYRFSASLNHFYGELPQNFCDSPLMSIINLSHNSLLGRIPEPKNCKKLVSLSLAGNSLTGEIPASLVDLPVLTYLDLSNNNLTGSIPQGLENLKLALFNVSFNQLSGAVPFSLISGLPASFLQGNPDLCGPGLKTPCSQGHPTHHISGLTKMTCALISVACVLGVMSLAAGVILYYRSYKLKSRVDNWHSVYFYPLRISEHELIMGMNDKTAQGCGGAFGQVFILSLPSRELIAIKKLVNFGSRSWKSLKAEVKTLAKIRHKNIIKILGFCHSDDAIFLIYEFLHKGSLADLMSRNDSCLNWNVRLRIAIEVAQGLAYIHKDYVPHLLHRNVKSSNILLDADFVPKLTDFALHHIVGDSAFLSTVDSESAHSCYIAPEYKYNKKATEQIDVYSFGVVLLELVTGRRAERMQSSDSLDVVQWVRRKVNIANGAPQVLDPSVPEPSQQQMLEALDIALQCTSMMPEKRPSTLEVAKALQLISSTTNLHDAACSVAEDGSVPS 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7250580 7253770 + MC01g0151 Mch1g0344 675236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch1g0344 885 Gene3D Ribonuclease Inhibitor 22 206 IPR032675 -
Mch1g0344 885 Pfam Protein kinase domain 602 858 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0344 885 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 669 869 - -
Mch1g0344 885 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 262 525 - -
Mch1g0344 885 Pfam Leucine rich repeat 432 490 IPR001611 GO:0005515(InterPro)
Mch1g0344 885 Pfam Leucine rich repeat 118 177 IPR001611 GO:0005515(InterPro)
Mch1g0344 885 Gene3D Ribonuclease Inhibitor 214 530 IPR032675 -
Mch1g0344 885 FunFam Leucine-rich repeat family protein 25 182 - -
Mch1g0344 885 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 136 IPR050647 -
Mch1g0344 885 ProSiteProfiles Protein kinase domain profile. 593 864 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch1g0344 885 SUPERFAMILY Protein kinase-like (PK-like) 602 868 IPR011009 -
Mch1g0344 885 Gene3D Phosphorylase Kinase; domain 1 600 669 - -
Mch1g0344 885 SMART LRR_typ_2 164 188 IPR003591 -
Mch1g0344 885 SMART LRR_typ_2 263 287 IPR003591 -
Mch1g0344 885 SMART LRR_typ_2 238 261 IPR003591 -
Mch1g0344 885 SMART LRR_typ_2 92 116 IPR003591 -
Mch1g0344 885 SMART LRR_typ_2 117 140 IPR003591 -
Mch1g0344 885 SMART LRR_typ_2 454 478 IPR003591 -
Mch1g0344 885 SMART LRR_typ_2 189 214 IPR003591 -
Mch1g0344 885 ProSiteProfiles Leucine-rich repeat profile. 118 140 IPR001611 GO:0005515(InterPro)
Mch1g0344 885 SUPERFAMILY L domain-like 24 279 - -
Mch1g0344 885 Pfam Leucine Rich Repeat 240 261 IPR001611 GO:0005515(InterPro)
Mch1g0344 885 FunFam probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 583 668 - -
Mch1g0344 885 Gene3D Transferase(Phosphotransferase) domain 1 670 879 - -
Mch1g0344 885 SUPERFAMILY L domain-like 202 514 - -
Mch1g0344 885 ProSiteProfiles Leucine-rich repeat profile. 456 479 IPR001611 GO:0005515(InterPro)
Mch1g0344 885 ProSiteProfiles Leucine-rich repeat profile. 240 262 IPR001611 GO:0005515(InterPro)
Mch1g0344 885 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0344 Mch-Chr1:7250580 Mch6g2847 Mch-Chr6:29699103 1.30E-53 dispersed
Mch1g0344 Mch-Chr1:7250580 Mch1g1897 Mch-Chr1:18919743 3.02E-55 transposed
Mch1g0344 Mch-Chr1:7250580 Mch8g0305 Mch-Chr8:2136812 2.49E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77096 PF00069 Pkinase 8.70E-39 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch1g0344 - - - 0.0